Bornean orang-utan polyomavirus

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cossaviricota; Papovaviricetes; Sepolyvirales; Polyomaviridae; Alphapolyomavirus; Pongo pygmaeus polyomavirus 1

Average proteome isoelectric point is 6.21

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 5 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|C9X3W4|C9X3W4_9POLY Minor capsid protein VP2 OS=Bornean orang-utan polyomavirus OX=1604874 GN=VP3 PE=3 SV=1
MM1 pKa = 7.47GGVISLFFDD10 pKa = 3.03IVEE13 pKa = 4.39ISAEE17 pKa = 4.01LSTATGFAVDD27 pKa = 3.86AVLTGEE33 pKa = 3.94AAAAVEE39 pKa = 4.36TEE41 pKa = 4.29VMGLMTIEE49 pKa = 4.43GLSASEE55 pKa = 4.18ALGAMGLTMEE65 pKa = 5.37DD66 pKa = 3.84FSLMHH71 pKa = 7.26ALPGMLSEE79 pKa = 4.54AVGIGTLFQAISGASGLVAAGIRR102 pKa = 11.84YY103 pKa = 9.05GYY105 pKa = 10.05ARR107 pKa = 11.84EE108 pKa = 3.77VSIVNRR114 pKa = 11.84NKK116 pKa = 10.49RR117 pKa = 11.84NPSEE121 pKa = 3.93MALQVWRR128 pKa = 11.84PWDD131 pKa = 3.54YY132 pKa = 11.83YY133 pKa = 11.28DD134 pKa = 4.6ILFPGVNTFAHH145 pKa = 6.17YY146 pKa = 11.16LNILDD151 pKa = 4.79DD152 pKa = 3.9WASSLIHH159 pKa = 5.36TVSRR163 pKa = 11.84YY164 pKa = 7.19VWDD167 pKa = 5.59AILHH171 pKa = 5.7EE172 pKa = 4.69SRR174 pKa = 11.84HH175 pKa = 5.42QIGHH179 pKa = 7.09ASRR182 pKa = 11.84EE183 pKa = 4.1LVARR187 pKa = 11.84GSGHH191 pKa = 6.03FQDD194 pKa = 5.13LMARR198 pKa = 11.84LIEE201 pKa = 3.94NSRR204 pKa = 11.84WVLTTGPSNVYY215 pKa = 10.12SHH217 pKa = 7.1LEE219 pKa = 3.67SYY221 pKa = 10.31YY222 pKa = 10.22RR223 pKa = 11.84QLPGISPPQARR234 pKa = 11.84DD235 pKa = 3.15LYY237 pKa = 11.02RR238 pKa = 11.84RR239 pKa = 11.84LQEE242 pKa = 4.67KK243 pKa = 10.35IPDD246 pKa = 3.54RR247 pKa = 11.84HH248 pKa = 5.44QLAVATDD255 pKa = 3.81EE256 pKa = 4.14SAEE259 pKa = 4.18VIEE262 pKa = 5.07TYY264 pKa = 9.25PAPGGAHH271 pKa = 5.75QRR273 pKa = 11.84VCPDD277 pKa = 2.28WMLPLVLGLYY287 pKa = 10.89GDD289 pKa = 3.78ITPTFGEE296 pKa = 4.38YY297 pKa = 9.83LRR299 pKa = 11.84KK300 pKa = 9.72EE301 pKa = 4.37DD302 pKa = 3.8GPQKK306 pKa = 10.2KK307 pKa = 9.18RR308 pKa = 11.84RR309 pKa = 11.84RR310 pKa = 11.84LL311 pKa = 3.33

Molecular weight: 34.38 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|C9X3W7|C9X3W7_9POLY Small T antigen OS=Bornean orang-utan polyomavirus OX=1604874 GN=small T PE=4 SV=1
MM1 pKa = 7.9DD2 pKa = 5.14RR3 pKa = 11.84FLSRR7 pKa = 11.84EE8 pKa = 3.77EE9 pKa = 4.32SNEE12 pKa = 3.71LMEE15 pKa = 5.31LLNIPKK21 pKa = 9.59HH22 pKa = 6.19CYY24 pKa = 10.64GNFALMKK31 pKa = 9.1INHH34 pKa = 6.7RR35 pKa = 11.84KK36 pKa = 8.83MSLKK40 pKa = 9.85YY41 pKa = 10.36HH42 pKa = 6.84PDD44 pKa = 3.2KK45 pKa = 11.6GGDD48 pKa = 3.64PEE50 pKa = 5.33KK51 pKa = 10.19MARR54 pKa = 11.84LNALWQKK61 pKa = 10.07LQEE64 pKa = 4.64GIYY67 pKa = 9.98NARR70 pKa = 11.84QEE72 pKa = 4.4YY73 pKa = 6.51PTSFGSKK80 pKa = 7.83VGSWFWEE87 pKa = 4.03ANLITLKK94 pKa = 10.47EE95 pKa = 4.17YY96 pKa = 9.7YY97 pKa = 10.08GKK99 pKa = 10.64RR100 pKa = 11.84KK101 pKa = 9.54FDD103 pKa = 3.69EE104 pKa = 4.2NLIKK108 pKa = 10.33HH109 pKa = 6.16WPQCAEE115 pKa = 4.47KK116 pKa = 10.54ALQEE120 pKa = 4.59CKK122 pKa = 10.67CLTCKK127 pKa = 10.55LGLQHH132 pKa = 6.62QVYY135 pKa = 9.86KK136 pKa = 10.87QMHH139 pKa = 4.88QKK141 pKa = 10.21KK142 pKa = 9.29CIVWGEE148 pKa = 4.14CFCFKK153 pKa = 10.49CYY155 pKa = 10.45CIWFGRR161 pKa = 11.84GPLLSGFLVGMEE173 pKa = 4.51CNCGRR178 pKa = 11.84SGLSSGEE185 pKa = 4.23HH186 pKa = 5.44ISEE189 pKa = 4.05NKK191 pKa = 9.16PRR193 pKa = 11.84PKK195 pKa = 10.49LGG197 pKa = 3.3

Molecular weight: 22.98 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

5

0

5

1757

190

693

351.4

39.98

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.464 ± 1.141

2.447 ± 0.692

5.236 ± 0.543

7.057 ± 0.706

4.269 ± 0.713

6.659 ± 1.195

2.675 ± 0.437

4.326 ± 0.412

6.261 ± 1.375

10.074 ± 0.764

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.903 ± 0.468

4.496 ± 0.74

6.033 ± 0.686

3.813 ± 0.226

5.236 ± 0.652

6.261 ± 0.353

5.065 ± 0.697

5.976 ± 0.741

1.651 ± 0.362

4.098 ± 0.436
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski