Saimiri sciureus papillomavirus 3

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cossaviricota; Papovaviricetes; Zurhausenvirales; Papillomaviridae; Firstpapillomavirinae; Dyoomikronpapillomavirus; Dyoomikronpapillomavirus 1

Average proteome isoelectric point is 6.21

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 6 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|W5QK84|W5QK84_9PAPI Minor capsid protein L2 OS=Saimiri sciureus papillomavirus 3 OX=990306 GN=L2 PE=3 SV=1
MM1 pKa = 7.38IGAAPTLKK9 pKa = 10.6DD10 pKa = 3.67IILSEE15 pKa = 4.26LPEE18 pKa = 4.32PVDD21 pKa = 4.04LRR23 pKa = 11.84CHH25 pKa = 6.25EE26 pKa = 5.34DD27 pKa = 3.0INYY30 pKa = 10.76DD31 pKa = 3.64EE32 pKa = 4.76VDD34 pKa = 3.69SNEE37 pKa = 4.28DD38 pKa = 3.09VTEE41 pKa = 4.04GHH43 pKa = 6.21TGLYY47 pKa = 9.7QVVCQCNTCSQSLRR61 pKa = 11.84LLVKK65 pKa = 9.82CTEE68 pKa = 4.55DD69 pKa = 3.63DD70 pKa = 4.12VEE72 pKa = 4.37VLHH75 pKa = 7.45DD76 pKa = 4.85LLTTTLEE83 pKa = 4.36LVCPLCARR91 pKa = 11.84EE92 pKa = 4.04MNN94 pKa = 3.85

Molecular weight: 10.49 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|W5QK96|W5QK96_9PAPI Major capsid protein L1 OS=Saimiri sciureus papillomavirus 3 OX=990306 GN=L1 PE=3 SV=1
MM1 pKa = 8.02EE2 pKa = 5.19YY3 pKa = 8.09PTSIPDD9 pKa = 3.29LCSEE13 pKa = 3.89VDD15 pKa = 3.27IVPWHH20 pKa = 6.35LQLTCIFCKK29 pKa = 10.4CHH31 pKa = 7.26LDD33 pKa = 4.21VGDD36 pKa = 4.16LCAFIHH42 pKa = 7.16NDD44 pKa = 5.17LKK46 pKa = 11.33LKK48 pKa = 9.36WIKK51 pKa = 10.35SYY53 pKa = 10.48PYY55 pKa = 9.7AACHH59 pKa = 6.18RR60 pKa = 11.84CILLKK65 pKa = 10.81ARR67 pKa = 11.84VLAWRR72 pKa = 11.84YY73 pKa = 5.45QTEE76 pKa = 3.63AAYY79 pKa = 10.59ARR81 pKa = 11.84TVEE84 pKa = 4.31HH85 pKa = 7.68DD86 pKa = 3.54CGQPLGNIRR95 pKa = 11.84MRR97 pKa = 11.84CIVCTALLTSEE108 pKa = 4.58DD109 pKa = 3.85KK110 pKa = 10.53IRR112 pKa = 11.84HH113 pKa = 5.55IEE115 pKa = 3.58HH116 pKa = 6.41HH117 pKa = 6.22RR118 pKa = 11.84RR119 pKa = 11.84FVKK122 pKa = 10.5AAGYY126 pKa = 8.33WRR128 pKa = 11.84GRR130 pKa = 11.84CYY132 pKa = 10.74HH133 pKa = 6.73CWNTALL139 pKa = 4.6

Molecular weight: 16.28 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

6

0

6

2278

94

647

379.7

42.04

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

9.263 ± 0.744

2.809 ± 0.756

5.926 ± 0.208

5.224 ± 0.789

3.6 ± 0.612

6.19 ± 0.347

2.502 ± 0.623

3.731 ± 0.409

4.478 ± 0.676

7.946 ± 0.596

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.8 ± 0.304

3.205 ± 0.701

6.936 ± 1.054

4.302 ± 0.532

5.751 ± 0.35

7.463 ± 0.876

6.892 ± 0.506

6.673 ± 0.753

1.8 ± 0.457

3.512 ± 0.262
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski