Tetterwort vein chlorosis virus

Taxonomy: Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Alsuviricetes; Martellivirales; Closteroviridae; Crinivirus

Average proteome isoelectric point is 6.56

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 13 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A0M4MYI6|A0A0M4MYI6_9CLOS Leader protease OS=Tetterwort vein chlorosis virus OX=1712389 PE=4 SV=1
MM1 pKa = 7.32GLIIVVYY8 pKa = 10.35KK9 pKa = 8.3FYY11 pKa = 11.1CGVNIYY17 pKa = 10.27YY18 pKa = 10.49CSNNRR23 pKa = 11.84DD24 pKa = 3.28FVGDD28 pKa = 3.72FEE30 pKa = 5.42VVTTTEE36 pKa = 4.01LEE38 pKa = 4.0KK39 pKa = 10.76LVEE42 pKa = 4.18IFEE45 pKa = 4.53SFPFVRR51 pKa = 11.84TTWW54 pKa = 3.01

Molecular weight: 6.4 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0M4LY14|A0A0M4LY14_9CLOS 59.7-kDa protein OS=Tetterwort vein chlorosis virus OX=1712389 PE=4 SV=1
MM1 pKa = 6.83LTMYY5 pKa = 7.66RR6 pKa = 11.84THH8 pKa = 6.96VIHH11 pKa = 6.98LFPHH15 pKa = 5.26GRR17 pKa = 11.84IWFHH21 pKa = 6.51EE22 pKa = 4.03KK23 pKa = 10.45SIPKK27 pKa = 9.68QKK29 pKa = 10.24QNKK32 pKa = 7.47KK33 pKa = 9.96QKK35 pKa = 9.28TKK37 pKa = 9.47TKK39 pKa = 9.88QNISRR44 pKa = 11.84RR45 pKa = 11.84LYY47 pKa = 10.65LKK49 pKa = 10.42LNKK52 pKa = 8.84FTVVFAHH59 pKa = 6.27TFRR62 pKa = 11.84ARR64 pKa = 11.84CLCAMFRR71 pKa = 11.84HH72 pKa = 6.12VSRR75 pKa = 11.84EE76 pKa = 3.64RR77 pKa = 3.27

Molecular weight: 9.5 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

13

0

13

4987

44

1992

383.6

44.21

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

3.91 ± 0.459

2.206 ± 0.285

6.517 ± 0.351

5.153 ± 0.272

5.875 ± 0.53

4.833 ± 0.246

2.065 ± 0.245

6.818 ± 0.372

7.7 ± 0.292

9.505 ± 0.642

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.847 ± 0.256

6.357 ± 0.683

3.128 ± 0.271

2.727 ± 0.247

5.354 ± 0.579

7.419 ± 0.396

5.474 ± 0.442

6.918 ± 0.384

0.862 ± 0.153

4.331 ± 0.421
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski