Arthrobotrys oligospora (strain ATCC 24927 / CBS 115.81 / DSM 1491) (Nematode-trapping fungus) (Didymozoophaga oligospora)

Taxonomy: cellular organisms; Eukaryota; Opisthokonta; Fungi; Dikarya; Ascomycota; saccharomyceta; Pezizomycotina; Orbiliomycetes; Orbiliales; Orbiliaceae; Orbilia; Orbilia oligospora

Average proteome isoelectric point is 6.47

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 11478 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|G1XPG7|G1XPG7_ARTOA Uncharacterized protein OS=Arthrobotrys oligospora (strain ATCC 24927 / CBS 115.81 / DSM 1491) OX=756982 GN=AOL_s00173g335 PE=4 SV=1
MM1 pKa = 7.46LRR3 pKa = 11.84LILSSLLVLGAAAVPAAKK21 pKa = 9.93EE22 pKa = 3.66LSEE25 pKa = 4.25RR26 pKa = 11.84QLPTYY31 pKa = 7.04TLKK34 pKa = 9.75VTGSGIAADD43 pKa = 3.98TFLKK47 pKa = 9.14ITEE50 pKa = 4.18VDD52 pKa = 3.25GTNYY56 pKa = 10.23VGLVPSTDD64 pKa = 3.14ASTFSYY70 pKa = 10.92DD71 pKa = 3.09AATSEE76 pKa = 4.61LSAVDD81 pKa = 3.86DD82 pKa = 4.09AAVTLFSQSFLNQGDD97 pKa = 4.16VYY99 pKa = 10.7EE100 pKa = 4.32EE101 pKa = 4.25TPAPVSFRR109 pKa = 11.84NEE111 pKa = 3.32TDD113 pKa = 2.78INGCVDD119 pKa = 3.29TNEE122 pKa = 4.9CGFEE126 pKa = 4.08SWTLDD131 pKa = 3.7PASGALGVVRR141 pKa = 11.84TTSPNLYY148 pKa = 10.18ACDD151 pKa = 5.1DD152 pKa = 3.91GAQYY156 pKa = 10.93LLWIGPTTWVTTFCTPISLSAVV178 pKa = 3.33

Molecular weight: 18.82 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|G1X9U8|G1X9U8_ARTOA F-box domain-containing protein OS=Arthrobotrys oligospora (strain ATCC 24927 / CBS 115.81 / DSM 1491) OX=756982 GN=AOL_s00076g437 PE=4 SV=1
MM1 pKa = 7.74TILTLLRR8 pKa = 11.84RR9 pKa = 11.84PAISCLRR16 pKa = 11.84STASSSSRR24 pKa = 11.84RR25 pKa = 11.84TFTSLLRR32 pKa = 11.84TPTTIITLQTRR43 pKa = 11.84PTLHH47 pKa = 6.8SSPTSLIPQTTSSTSQTTSTSLLLPLQGLTQTRR80 pKa = 11.84GHH82 pKa = 6.29RR83 pKa = 11.84RR84 pKa = 11.84KK85 pKa = 8.38TYY87 pKa = 8.98NPSHH91 pKa = 7.03IVRR94 pKa = 11.84KK95 pKa = 9.74RR96 pKa = 11.84RR97 pKa = 11.84FGFLARR103 pKa = 11.84LRR105 pKa = 11.84SKK107 pKa = 9.3TGKK110 pKa = 10.27NILKK114 pKa = 9.96RR115 pKa = 11.84RR116 pKa = 11.84KK117 pKa = 9.1AKK119 pKa = 8.97GRR121 pKa = 11.84KK122 pKa = 8.03MLTHH126 pKa = 7.27

Molecular weight: 14.23 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

11478

0

11478

5722854

49

12515

498.6

55.34

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.544 ± 0.022

1.21 ± 0.009

5.649 ± 0.015

6.632 ± 0.027

3.725 ± 0.015

6.843 ± 0.022

2.179 ± 0.009

5.42 ± 0.017

5.543 ± 0.021

8.53 ± 0.024

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.019 ± 0.009

4.093 ± 0.013

6.176 ± 0.027

3.822 ± 0.018

5.768 ± 0.019

8.351 ± 0.028

6.337 ± 0.026

5.881 ± 0.017

1.363 ± 0.009

2.915 ± 0.012
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski