Myroides odoratus DSM 2801

Taxonomy: cellular organisms; Bacteria; FCB group; Bacteroidetes/Chlorobi group; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Myroides; Myroides odoratus

Average proteome isoelectric point is 6.33

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3687 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|H1Z978|H1Z978_MYROD Transporter hydrophobe/amphiphile efflux-1 (HAE1) family OS=Myroides odoratus DSM 2801 OX=929704 GN=Myrod_2783 PE=3 SV=1
MM1 pKa = 7.49TNNFEE6 pKa = 4.36EE7 pKa = 4.86IINRR11 pKa = 11.84TEE13 pKa = 3.82VQEE16 pKa = 4.11VLNQYY21 pKa = 8.08ITEE24 pKa = 4.22NGGNIHH30 pKa = 6.63YY31 pKa = 10.48DD32 pKa = 3.3GGSFTYY38 pKa = 10.63LDD40 pKa = 3.86EE41 pKa = 4.87NGNTVTMDD49 pKa = 3.3MTTIIQGSEE58 pKa = 4.0TVTTLVKK65 pKa = 10.84DD66 pKa = 3.51PLNNGKK72 pKa = 10.23YY73 pKa = 9.93IYY75 pKa = 9.73TNEE78 pKa = 4.07AGVEE82 pKa = 4.18VVIDD86 pKa = 3.51VTTEE90 pKa = 3.51VTNNFEE96 pKa = 4.27EE97 pKa = 4.81IINRR101 pKa = 11.84TEE103 pKa = 3.82VQEE106 pKa = 4.11VLNQYY111 pKa = 8.08ITEE114 pKa = 4.22NGGNIHH120 pKa = 6.63YY121 pKa = 10.48DD122 pKa = 3.3GGSFTYY128 pKa = 10.63LDD130 pKa = 3.86EE131 pKa = 4.87NGNTVTMDD139 pKa = 3.02MTTIVQGSEE148 pKa = 3.94TVTTIVKK155 pKa = 10.13DD156 pKa = 3.46PSGTYY161 pKa = 9.59TYY163 pKa = 10.57TNEE166 pKa = 4.03AGVAMVIDD174 pKa = 3.89VQADD178 pKa = 3.49VVNNFEE184 pKa = 4.36EE185 pKa = 4.91IINKK189 pKa = 8.56TEE191 pKa = 3.94VQEE194 pKa = 5.68LLTQVINNNGGNVHH208 pKa = 6.46FDD210 pKa = 3.22EE211 pKa = 6.44GGFTYY216 pKa = 10.37TDD218 pKa = 3.47EE219 pKa = 4.69NGASQTVDD227 pKa = 2.82LTTIVQGSEE236 pKa = 3.94TVTTIVKK243 pKa = 10.13DD244 pKa = 3.46PSGTYY249 pKa = 9.59TYY251 pKa = 10.57TNEE254 pKa = 4.03AGVAMVIDD262 pKa = 3.89VQADD266 pKa = 3.49VVNNFEE272 pKa = 4.36EE273 pKa = 4.91IINKK277 pKa = 8.56TEE279 pKa = 3.94VQEE282 pKa = 5.68LLTQVINNNGGNVHH296 pKa = 6.46FDD298 pKa = 3.22EE299 pKa = 6.44GGFTYY304 pKa = 10.37TDD306 pKa = 3.47EE307 pKa = 4.69NGASQTVDD315 pKa = 2.82LTTIVQGSEE324 pKa = 3.94TVTTIVKK331 pKa = 10.13DD332 pKa = 3.46PSGTYY337 pKa = 9.59TYY339 pKa = 10.57TNEE342 pKa = 4.03AGVAMVIDD350 pKa = 3.89VQADD354 pKa = 3.49VVNNFEE360 pKa = 4.36EE361 pKa = 4.91IINKK365 pKa = 8.56TEE367 pKa = 3.94VQEE370 pKa = 5.68LLTQVINNNGGNVHH384 pKa = 6.46FDD386 pKa = 3.22EE387 pKa = 6.44GGFTYY392 pKa = 10.37TDD394 pKa = 3.47EE395 pKa = 4.69NGASQTVDD403 pKa = 2.82LTTIVQGSEE412 pKa = 3.94TVTTIVKK419 pKa = 10.13DD420 pKa = 3.46PSGTYY425 pKa = 9.59TYY427 pKa = 10.57TNEE430 pKa = 3.8AGVAVVIDD438 pKa = 3.68VQADD442 pKa = 3.52VVNNFEE448 pKa = 4.36EE449 pKa = 4.91IINKK453 pKa = 8.56TEE455 pKa = 3.94VQEE458 pKa = 5.68LLTQVINNNGGNVHH472 pKa = 6.46FDD474 pKa = 3.22EE475 pKa = 6.44GGFTYY480 pKa = 10.37TDD482 pKa = 3.47EE483 pKa = 4.69NGASQTVDD491 pKa = 2.82LTTIVQGSEE500 pKa = 3.94TVTTIVKK507 pKa = 10.13DD508 pKa = 3.46PSGTYY513 pKa = 9.59TYY515 pKa = 10.57TNEE518 pKa = 4.03AGVAMVIDD526 pKa = 3.89VQADD530 pKa = 3.49VVNNFEE536 pKa = 4.36EE537 pKa = 4.91IINKK541 pKa = 8.56TEE543 pKa = 3.94VQEE546 pKa = 5.36LLTQVVNNVGGNMTYY561 pKa = 10.83DD562 pKa = 3.47GTGFTYY568 pKa = 10.63TDD570 pKa = 3.61GNGDD574 pKa = 3.81TVAMDD579 pKa = 3.48MSTFVQGNEE588 pKa = 3.87TTTTLVKK595 pKa = 10.57DD596 pKa = 3.57ASDD599 pKa = 3.52NGKK602 pKa = 8.5YY603 pKa = 9.22TYY605 pKa = 10.52TNEE608 pKa = 4.02TNTTVEE614 pKa = 4.15LDD616 pKa = 3.23IPTDD620 pKa = 3.53VINNFEE626 pKa = 4.63TIVADD631 pKa = 3.95ANVGNLLQQLVVKK644 pKa = 10.73SNTLVEE650 pKa = 4.15TAVNYY655 pKa = 10.06VVLDD659 pKa = 3.45VDD661 pKa = 3.49TTIIVDD667 pKa = 3.87AEE669 pKa = 4.16AADD672 pKa = 3.85VTITLPAATSEE683 pKa = 4.17NKK685 pKa = 10.17GRR687 pKa = 11.84MITIRR692 pKa = 11.84KK693 pKa = 8.81IDD695 pKa = 3.63EE696 pKa = 3.97SDD698 pKa = 3.26NAVNFSQQIKK708 pKa = 7.96TSKK711 pKa = 9.75TEE713 pKa = 3.84GFTSINFGITVNIQSNGSVWYY734 pKa = 8.63MINN737 pKa = 3.18

Molecular weight: 80.03 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|H1Z845|H1Z845_MYROD Quinolinate phosphoribosyltransferase [decarboxylating] OS=Myroides odoratus DSM 2801 OX=929704 GN=Myrod_0998 PE=3 SV=1
MM1 pKa = 7.31NRR3 pKa = 11.84FSLSFLRR10 pKa = 11.84SIAFLFLVVGMILMVQNIDD29 pKa = 3.23QFLYY33 pKa = 10.53KK34 pKa = 9.1QTLEE38 pKa = 3.92IGSLAFALACITISILGQRR57 pKa = 11.84KK58 pKa = 8.7LKK60 pKa = 10.43KK61 pKa = 8.82STRR64 pKa = 11.84ISNLL68 pKa = 3.06

Molecular weight: 7.73 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3687

0

3687

1212748

30

2726

328.9

37.17

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.721 ± 0.043

0.761 ± 0.011

5.268 ± 0.03

6.653 ± 0.044

5.061 ± 0.03

6.284 ± 0.042

1.867 ± 0.019

7.546 ± 0.04

7.107 ± 0.042

9.558 ± 0.052

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.257 ± 0.02

5.549 ± 0.046

3.324 ± 0.023

4.283 ± 0.031

3.477 ± 0.027

5.952 ± 0.029

6.158 ± 0.051

6.68 ± 0.036

1.042 ± 0.013

4.454 ± 0.032
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski