Amino acid dipepetide frequency for Sclerotinia sclerotiorum endornavirus 1

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
2.865AlaAla: 2.865 ± 0.0
0.86AlaCys: 0.86 ± 0.0
2.292AlaAsp: 2.292 ± 0.0
2.006AlaGlu: 2.006 ± 0.0
1.146AlaPhe: 1.146 ± 0.0
2.292AlaGly: 2.292 ± 0.0
1.433AlaHis: 1.433 ± 0.0
4.871AlaIle: 4.871 ± 0.0
3.152AlaLys: 3.152 ± 0.0
6.304AlaLeu: 6.304 ± 0.0
0.86AlaMet: 0.86 ± 0.0
4.011AlaAsn: 4.011 ± 0.0
1.146AlaPro: 1.146 ± 0.0
2.006AlaGln: 2.006 ± 0.0
3.152AlaArg: 3.152 ± 0.0
4.585AlaSer: 4.585 ± 0.0
3.725AlaThr: 3.725 ± 0.0
2.579AlaVal: 2.579 ± 0.0
0.573AlaTrp: 0.573 ± 0.0
1.433AlaTyr: 1.433 ± 0.0
0.0AlaXaa: 0.0 ± 0.0
Cys
2.292CysAla: 2.292 ± 0.0
1.146CysCys: 1.146 ± 0.0
0.287CysAsp: 0.287 ± 0.0
0.287CysGlu: 0.287 ± 0.0
0.0CysPhe: 0.0 ± 0.0
1.719CysGly: 1.719 ± 0.0
0.573CysHis: 0.573 ± 0.0
2.292CysIle: 2.292 ± 0.0
1.146CysLys: 1.146 ± 0.0
1.146CysLeu: 1.146 ± 0.0
0.573CysMet: 0.573 ± 0.0
0.573CysAsn: 0.573 ± 0.0
1.719CysPro: 1.719 ± 0.0
1.146CysGln: 1.146 ± 0.0
0.287CysArg: 0.287 ± 0.0
1.719CysSer: 1.719 ± 0.0
1.433CysThr: 1.433 ± 0.0
1.433CysVal: 1.433 ± 0.0
0.287CysTrp: 0.287 ± 0.0
0.86CysTyr: 0.86 ± 0.0
0.0CysXaa: 0.0 ± 0.0
Asp
4.011AspAla: 4.011 ± 0.0
0.573AspCys: 0.573 ± 0.0
3.438AspAsp: 3.438 ± 0.0
3.438AspGlu: 3.438 ± 0.0
2.006AspPhe: 2.006 ± 0.0
3.438AspGly: 3.438 ± 0.0
1.433AspHis: 1.433 ± 0.0
8.023AspIle: 8.023 ± 0.0
4.298AspLys: 4.298 ± 0.0
4.585AspLeu: 4.585 ± 0.0
1.433AspMet: 1.433 ± 0.0
5.731AspAsn: 5.731 ± 0.0
1.719AspPro: 1.719 ± 0.0
3.152AspGln: 3.152 ± 0.0
1.719AspArg: 1.719 ± 0.0
4.298AspSer: 4.298 ± 0.0
3.438AspThr: 3.438 ± 0.0
6.877AspVal: 6.877 ± 0.0
1.719AspTrp: 1.719 ± 0.0
2.292AspTyr: 2.292 ± 0.0
0.0AspXaa: 0.0 ± 0.0
Glu
0.86GluAla: 0.86 ± 0.0
1.146GluCys: 1.146 ± 0.0
3.725GluAsp: 3.725 ± 0.0
2.865GluGlu: 2.865 ± 0.0
2.006GluPhe: 2.006 ± 0.0
1.719GluGly: 1.719 ± 0.0
2.292GluHis: 2.292 ± 0.0
2.865GluIle: 2.865 ± 0.0
2.006GluLys: 2.006 ± 0.0
3.438GluLeu: 3.438 ± 0.0
1.719GluMet: 1.719 ± 0.0
1.433GluAsn: 1.433 ± 0.0
1.146GluPro: 1.146 ± 0.0
2.292GluGln: 2.292 ± 0.0
0.86GluArg: 0.86 ± 0.0
2.579GluSer: 2.579 ± 0.0
2.865GluThr: 2.865 ± 0.0
3.438GluVal: 3.438 ± 0.0
0.86GluTrp: 0.86 ± 0.0
1.146GluTyr: 1.146 ± 0.0
0.0GluXaa: 0.0 ± 0.0
Phe
1.146PheAla: 1.146 ± 0.0
0.287PheCys: 0.287 ± 0.0
3.152PheAsp: 3.152 ± 0.0
1.146PheGlu: 1.146 ± 0.0
0.86PhePhe: 0.86 ± 0.0
2.006PheGly: 2.006 ± 0.0
1.146PheHis: 1.146 ± 0.0
2.579PheIle: 2.579 ± 0.0
1.146PheLys: 1.146 ± 0.0
1.146PheLeu: 1.146 ± 0.0
1.433PheMet: 1.433 ± 0.0
2.579PheAsn: 2.579 ± 0.0
0.287PhePro: 0.287 ± 0.0
0.573PheGln: 0.573 ± 0.0
1.146PheArg: 1.146 ± 0.0
1.719PheSer: 1.719 ± 0.0
2.579PheThr: 2.579 ± 0.0
2.006PheVal: 2.006 ± 0.0
0.0PheTrp: 0.0 ± 0.0
0.86PheTyr: 0.86 ± 0.0
0.0PheXaa: 0.0 ± 0.0
Gly
2.579GlyAla: 2.579 ± 0.0
0.86GlyCys: 0.86 ± 0.0
4.585GlyAsp: 4.585 ± 0.0
1.719GlyGlu: 1.719 ± 0.0
1.433GlyPhe: 1.433 ± 0.0
4.011GlyGly: 4.011 ± 0.0
1.719GlyHis: 1.719 ± 0.0
4.585GlyIle: 4.585 ± 0.0
4.011GlyLys: 4.011 ± 0.0
3.438GlyLeu: 3.438 ± 0.0
1.719GlyMet: 1.719 ± 0.0
4.585GlyAsn: 4.585 ± 0.0
1.719GlyPro: 1.719 ± 0.0
1.719GlyGln: 1.719 ± 0.0
3.152GlyArg: 3.152 ± 0.0
3.152GlySer: 3.152 ± 0.0
4.585GlyThr: 4.585 ± 0.0
2.865GlyVal: 2.865 ± 0.0
0.573GlyTrp: 0.573 ± 0.0
3.152GlyTyr: 3.152 ± 0.0
0.0GlyXaa: 0.0 ± 0.0
His
1.433HisAla: 1.433 ± 0.0
0.573HisCys: 0.573 ± 0.0
1.146HisAsp: 1.146 ± 0.0
1.719HisGlu: 1.719 ± 0.0
0.287HisPhe: 0.287 ± 0.0
2.292HisGly: 2.292 ± 0.0
0.573HisHis: 0.573 ± 0.0
2.865HisIle: 2.865 ± 0.0
1.146HisLys: 1.146 ± 0.0
4.298HisLeu: 4.298 ± 0.0
0.287HisMet: 0.287 ± 0.0
2.292HisAsn: 2.292 ± 0.0
1.146HisPro: 1.146 ± 0.0
0.573HisGln: 0.573 ± 0.0
0.86HisArg: 0.86 ± 0.0
3.725HisSer: 3.725 ± 0.0
1.433HisThr: 1.433 ± 0.0
0.86HisVal: 0.86 ± 0.0
0.86HisTrp: 0.86 ± 0.0
2.292HisTyr: 2.292 ± 0.0
0.0HisXaa: 0.0 ± 0.0
Ile
4.011IleAla: 4.011 ± 0.0
2.292IleCys: 2.292 ± 0.0
6.59IleAsp: 6.59 ± 0.0
4.298IleGlu: 4.298 ± 0.0
1.433IlePhe: 1.433 ± 0.0
4.871IleGly: 4.871 ± 0.0
1.719IleHis: 1.719 ± 0.0
6.59IleIle: 6.59 ± 0.0
6.59IleLys: 6.59 ± 0.0
5.731IleLeu: 5.731 ± 0.0
2.006IleMet: 2.006 ± 0.0
10.029IleAsn: 10.029 ± 0.0
2.865IlePro: 2.865 ± 0.0
2.292IleGln: 2.292 ± 0.0
1.719IleArg: 1.719 ± 0.0
5.158IleSer: 5.158 ± 0.0
6.304IleThr: 6.304 ± 0.0
4.011IleVal: 4.011 ± 0.0
0.573IleTrp: 0.573 ± 0.0
3.725IleTyr: 3.725 ± 0.0
0.0IleXaa: 0.0 ± 0.0
Lys
1.719LysAla: 1.719 ± 0.0
1.719LysCys: 1.719 ± 0.0
3.725LysAsp: 3.725 ± 0.0
2.579LysGlu: 2.579 ± 0.0
2.865LysPhe: 2.865 ± 0.0
2.579LysGly: 2.579 ± 0.0
2.579LysHis: 2.579 ± 0.0
4.011LysIle: 4.011 ± 0.0
4.011LysLys: 4.011 ± 0.0
7.45LysLeu: 7.45 ± 0.0
2.006LysMet: 2.006 ± 0.0
4.011LysAsn: 4.011 ± 0.0
4.011LysPro: 4.011 ± 0.0
2.579LysGln: 2.579 ± 0.0
0.86LysArg: 0.86 ± 0.0
3.725LysSer: 3.725 ± 0.0
3.438LysThr: 3.438 ± 0.0
3.152LysVal: 3.152 ± 0.0
1.433LysTrp: 1.433 ± 0.0
3.152LysTyr: 3.152 ± 0.0
0.0LysXaa: 0.0 ± 0.0
Leu
5.444LeuAla: 5.444 ± 0.0
1.146LeuCys: 1.146 ± 0.0
5.158LeuAsp: 5.158 ± 0.0
3.438LeuGlu: 3.438 ± 0.0
2.865LeuPhe: 2.865 ± 0.0
4.585LeuGly: 4.585 ± 0.0
1.719LeuHis: 1.719 ± 0.0
6.304LeuIle: 6.304 ± 0.0
5.158LeuLys: 5.158 ± 0.0
8.023LeuLeu: 8.023 ± 0.0
4.298LeuMet: 4.298 ± 0.0
5.444LeuAsn: 5.444 ± 0.0
5.444LeuPro: 5.444 ± 0.0
1.146LeuGln: 1.146 ± 0.0
4.011LeuArg: 4.011 ± 0.0
6.59LeuSer: 6.59 ± 0.0
5.444LeuThr: 5.444 ± 0.0
4.011LeuVal: 4.011 ± 0.0
1.146LeuTrp: 1.146 ± 0.0
3.725LeuTyr: 3.725 ± 0.0
0.0LeuXaa: 0.0 ± 0.0
Met
0.573MetAla: 0.573 ± 0.0
0.287MetCys: 0.287 ± 0.0
1.433MetAsp: 1.433 ± 0.0
1.719MetGlu: 1.719 ± 0.0
1.146MetPhe: 1.146 ± 0.0
2.579MetGly: 2.579 ± 0.0
0.287MetHis: 0.287 ± 0.0
1.719MetIle: 1.719 ± 0.0
1.719MetLys: 1.719 ± 0.0
1.719MetLeu: 1.719 ± 0.0
0.86MetMet: 0.86 ± 0.0
1.719MetAsn: 1.719 ± 0.0
2.006MetPro: 2.006 ± 0.0
0.86MetGln: 0.86 ± 0.0
2.292MetArg: 2.292 ± 0.0
2.006MetSer: 2.006 ± 0.0
4.585MetThr: 4.585 ± 0.0
2.006MetVal: 2.006 ± 0.0
0.287MetTrp: 0.287 ± 0.0
0.573MetTyr: 0.573 ± 0.0
0.0MetXaa: 0.0 ± 0.0
Asn
3.725AsnAla: 3.725 ± 0.0
1.433AsnCys: 1.433 ± 0.0
4.585AsnAsp: 4.585 ± 0.0
4.011AsnGlu: 4.011 ± 0.0
1.146AsnPhe: 1.146 ± 0.0
2.865AsnGly: 2.865 ± 0.0
2.579AsnHis: 2.579 ± 0.0
9.456AsnIle: 9.456 ± 0.0
7.45AsnLys: 7.45 ± 0.0
5.444AsnLeu: 5.444 ± 0.0
3.152AsnMet: 3.152 ± 0.0
4.871AsnAsn: 4.871 ± 0.0
2.865AsnPro: 2.865 ± 0.0
2.006AsnGln: 2.006 ± 0.0
2.006AsnArg: 2.006 ± 0.0
4.871AsnSer: 4.871 ± 0.0
5.731AsnThr: 5.731 ± 0.0
3.725AsnVal: 3.725 ± 0.0
0.287AsnTrp: 0.287 ± 0.0
3.725AsnTyr: 3.725 ± 0.0
0.0AsnXaa: 0.0 ± 0.0
Pro
1.719ProAla: 1.719 ± 0.0
1.146ProCys: 1.146 ± 0.0
3.438ProAsp: 3.438 ± 0.0
1.433ProGlu: 1.433 ± 0.0
0.86ProPhe: 0.86 ± 0.0
2.006ProGly: 2.006 ± 0.0
2.006ProHis: 2.006 ± 0.0
2.006ProIle: 2.006 ± 0.0
0.86ProLys: 0.86 ± 0.0
2.579ProLeu: 2.579 ± 0.0
0.0ProMet: 0.0 ± 0.0
4.298ProAsn: 4.298 ± 0.0
2.292ProPro: 2.292 ± 0.0
1.433ProGln: 1.433 ± 0.0
1.146ProArg: 1.146 ± 0.0
1.719ProSer: 1.719 ± 0.0
5.158ProThr: 5.158 ± 0.0
2.292ProVal: 2.292 ± 0.0
0.0ProTrp: 0.0 ± 0.0
0.573ProTyr: 0.573 ± 0.0
0.0ProXaa: 0.0 ± 0.0
Gln
2.865GlnAla: 2.865 ± 0.0
1.433GlnCys: 1.433 ± 0.0
1.719GlnAsp: 1.719 ± 0.0
1.433GlnGlu: 1.433 ± 0.0
1.719GlnPhe: 1.719 ± 0.0
1.433GlnGly: 1.433 ± 0.0
0.86GlnHis: 0.86 ± 0.0
2.865GlnIle: 2.865 ± 0.0
0.86GlnLys: 0.86 ± 0.0
4.298GlnLeu: 4.298 ± 0.0
1.719GlnMet: 1.719 ± 0.0
0.86GlnAsn: 0.86 ± 0.0
1.146GlnPro: 1.146 ± 0.0
2.006GlnGln: 2.006 ± 0.0
1.719GlnArg: 1.719 ± 0.0
2.292GlnSer: 2.292 ± 0.0
1.433GlnThr: 1.433 ± 0.0
2.865GlnVal: 2.865 ± 0.0
0.0GlnTrp: 0.0 ± 0.0
1.146GlnTyr: 1.146 ± 0.0
0.0GlnXaa: 0.0 ± 0.0
Arg
2.579ArgAla: 2.579 ± 0.0
0.573ArgCys: 0.573 ± 0.0
1.433ArgAsp: 1.433 ± 0.0
0.86ArgGlu: 0.86 ± 0.0
2.579ArgPhe: 2.579 ± 0.0
1.719ArgGly: 1.719 ± 0.0
1.146ArgHis: 1.146 ± 0.0
2.865ArgIle: 2.865 ± 0.0
2.292ArgLys: 2.292 ± 0.0
4.585ArgLeu: 4.585 ± 0.0
1.146ArgMet: 1.146 ± 0.0
3.152ArgAsn: 3.152 ± 0.0
0.287ArgPro: 0.287 ± 0.0
0.86ArgGln: 0.86 ± 0.0
1.719ArgArg: 1.719 ± 0.0
3.438ArgSer: 3.438 ± 0.0
1.433ArgThr: 1.433 ± 0.0
2.865ArgVal: 2.865 ± 0.0
0.573ArgTrp: 0.573 ± 0.0
0.287ArgTyr: 0.287 ± 0.0
0.0ArgXaa: 0.0 ± 0.0
Ser
2.579SerAla: 2.579 ± 0.0
1.433SerCys: 1.433 ± 0.0
4.011SerAsp: 4.011 ± 0.0
2.579SerGlu: 2.579 ± 0.0
1.719SerPhe: 1.719 ± 0.0
5.444SerGly: 5.444 ± 0.0
1.719SerHis: 1.719 ± 0.0
5.444SerIle: 5.444 ± 0.0
4.871SerLys: 4.871 ± 0.0
6.304SerLeu: 6.304 ± 0.0
1.433SerMet: 1.433 ± 0.0
5.158SerAsn: 5.158 ± 0.0
1.433SerPro: 1.433 ± 0.0
3.438SerGln: 3.438 ± 0.0
2.579SerArg: 2.579 ± 0.0
4.298SerSer: 4.298 ± 0.0
5.158SerThr: 5.158 ± 0.0
5.444SerVal: 5.444 ± 0.0
0.86SerTrp: 0.86 ± 0.0
4.011SerTyr: 4.011 ± 0.0
0.0SerXaa: 0.0 ± 0.0
Thr
2.006ThrAla: 2.006 ± 0.0
2.006ThrCys: 2.006 ± 0.0
5.731ThrAsp: 5.731 ± 0.0
0.86ThrGlu: 0.86 ± 0.0
1.433ThrPhe: 1.433 ± 0.0
4.011ThrGly: 4.011 ± 0.0
2.579ThrHis: 2.579 ± 0.0
6.877ThrIle: 6.877 ± 0.0
3.725ThrLys: 3.725 ± 0.0
4.871ThrLeu: 4.871 ± 0.0
2.292ThrMet: 2.292 ± 0.0
6.304ThrAsn: 6.304 ± 0.0
2.292ThrPro: 2.292 ± 0.0
3.438ThrGln: 3.438 ± 0.0
2.865ThrArg: 2.865 ± 0.0
4.871ThrSer: 4.871 ± 0.0
8.023ThrThr: 8.023 ± 0.0
5.731ThrVal: 5.731 ± 0.0
1.719ThrTrp: 1.719 ± 0.0
2.579ThrTyr: 2.579 ± 0.0
0.0ThrXaa: 0.0 ± 0.0
Val
4.871ValAla: 4.871 ± 0.0
0.86ValCys: 0.86 ± 0.0
7.163ValAsp: 7.163 ± 0.0
2.292ValGlu: 2.292 ± 0.0
0.86ValPhe: 0.86 ± 0.0
5.731ValGly: 5.731 ± 0.0
2.579ValHis: 2.579 ± 0.0
4.585ValIle: 4.585 ± 0.0
2.865ValLys: 2.865 ± 0.0
3.725ValLeu: 3.725 ± 0.0
1.719ValMet: 1.719 ± 0.0
5.444ValAsn: 5.444 ± 0.0
2.579ValPro: 2.579 ± 0.0
1.433ValGln: 1.433 ± 0.0
2.292ValArg: 2.292 ± 0.0
3.725ValSer: 3.725 ± 0.0
3.438ValThr: 3.438 ± 0.0
4.585ValVal: 4.585 ± 0.0
0.287ValTrp: 0.287 ± 0.0
2.579ValTyr: 2.579 ± 0.0
0.0ValXaa: 0.0 ± 0.0
Trp
0.573TrpAla: 0.573 ± 0.0
0.287TrpCys: 0.287 ± 0.0
0.86TrpAsp: 0.86 ± 0.0
0.573TrpGlu: 0.573 ± 0.0
0.86TrpPhe: 0.86 ± 0.0
0.0TrpGly: 0.0 ± 0.0
0.86TrpHis: 0.86 ± 0.0
0.0TrpIle: 0.0 ± 0.0
1.146TrpLys: 1.146 ± 0.0
2.579TrpLeu: 2.579 ± 0.0
0.287TrpMet: 0.287 ± 0.0
0.86TrpAsn: 0.86 ± 0.0
0.287TrpPro: 0.287 ± 0.0
1.146TrpGln: 1.146 ± 0.0
0.287TrpArg: 0.287 ± 0.0
0.86TrpSer: 0.86 ± 0.0
0.573TrpThr: 0.573 ± 0.0
0.573TrpVal: 0.573 ± 0.0
0.573TrpTrp: 0.573 ± 0.0
0.287TrpTyr: 0.287 ± 0.0
0.0TrpXaa: 0.0 ± 0.0
Tyr
3.438TyrAla: 3.438 ± 0.0
0.86TyrCys: 0.86 ± 0.0
3.152TyrAsp: 3.152 ± 0.0
2.006TyrGlu: 2.006 ± 0.0
0.573TyrPhe: 0.573 ± 0.0
0.86TyrGly: 0.86 ± 0.0
0.86TyrHis: 0.86 ± 0.0
2.292TyrIle: 2.292 ± 0.0
3.152TyrLys: 3.152 ± 0.0
3.438TyrLeu: 3.438 ± 0.0
1.146TyrMet: 1.146 ± 0.0
2.579TyrAsn: 2.579 ± 0.0
0.573TyrPro: 0.573 ± 0.0
0.573TyrGln: 0.573 ± 0.0
1.719TyrArg: 1.719 ± 0.0
4.585TyrSer: 4.585 ± 0.0
3.438TyrThr: 3.438 ± 0.0
2.292TyrVal: 2.292 ± 0.0
0.86TyrTrp: 0.86 ± 0.0
0.86TyrTyr: 0.86 ± 0.0
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.0XaaGly: 0.0 ± 0.0
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.0XaaLeu: 0.0 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.0XaaThr: 0.0 ± 0.0
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 1 proteins (3491 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski