Alteromonas phage ZP6

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Podoviridae; unclassified Podoviridae

Average proteome isoelectric point is 5.98

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 48 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A7D7KLF8|A0A7D7KLF8_9CAUD Uncharacterized protein OS=Alteromonas phage ZP6 OX=2492447 PE=4 SV=1
MM1 pKa = 7.44NNDD4 pKa = 3.04ARR6 pKa = 11.84NALNEE11 pKa = 4.23ALDD14 pKa = 3.9NAPVLGNAGRR24 pKa = 11.84ALDD27 pKa = 4.13GLLGLAQGSTLEE39 pKa = 4.79SVLQDD44 pKa = 3.12APSEE48 pKa = 4.03YY49 pKa = 10.02RR50 pKa = 11.84EE51 pKa = 4.07QAEE54 pKa = 3.59AWYY57 pKa = 9.39EE58 pKa = 3.8EE59 pKa = 4.27RR60 pKa = 11.84VADD63 pKa = 6.13GIAPEE68 pKa = 3.94QALEE72 pKa = 4.12EE73 pKa = 4.23LEE75 pKa = 4.8AWLGDD80 pKa = 3.95CC81 pKa = 5.81

Molecular weight: 8.7 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A3S9U891|A0A3S9U891_9CAUD Adenylosuccinate synthetase OS=Alteromonas phage ZP6 OX=2492447 PE=4 SV=1
MM1 pKa = 6.76STAFAKK7 pKa = 10.61YY8 pKa = 8.94KK9 pKa = 10.76AKK11 pKa = 10.18IRR13 pKa = 11.84EE14 pKa = 4.01AAKK17 pKa = 10.38EE18 pKa = 3.85GLSRR22 pKa = 11.84NEE24 pKa = 4.22LGRR27 pKa = 11.84KK28 pKa = 9.28SGVCAEE34 pKa = 4.88TITAHH39 pKa = 6.64LNRR42 pKa = 11.84GRR44 pKa = 11.84VPSILIAEE52 pKa = 5.02TILNTLGYY60 pKa = 9.75EE61 pKa = 3.66IVIRR65 pKa = 11.84KK66 pKa = 8.67RR67 pKa = 11.84KK68 pKa = 9.79KK69 pKa = 9.02II70 pKa = 3.59

Molecular weight: 7.79 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

48

0

48

11951

39

1203

249.0

27.75

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

9.045 ± 0.541

0.946 ± 0.143

6.359 ± 0.206

7.422 ± 0.383

3.305 ± 0.233

7.64 ± 0.525

1.64 ± 0.144

5.414 ± 0.174

5.606 ± 0.386

7.163 ± 0.3

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.996 ± 0.21

5.171 ± 0.287

3.431 ± 0.221

4.217 ± 0.238

5.631 ± 0.298

6.468 ± 0.354

5.974 ± 0.418

6.485 ± 0.327

1.757 ± 0.189

3.33 ± 0.151
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski