Papillibacter cinnamivorans DSM 12816

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Firmicutes; Clostridia; Eubacteriales; Oscillospiraceae; Papillibacter; Papillibacter cinnamivorans

Average proteome isoelectric point is 6.3

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2640 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1W1YI55|A0A1W1YI55_9FIRM Purine-binding chemotaxis protein CheW OS=Papillibacter cinnamivorans DSM 12816 OX=1122930 GN=SAMN02745168_0438 PE=4 SV=1
MM1 pKa = 7.67SSTFLGIQIGKK12 pKa = 9.71SGLNAAQINLNITGQNISNADD33 pKa = 3.5TQGYY37 pKa = 6.33TRR39 pKa = 11.84QSVITSSAPPSGAGYY54 pKa = 9.97VIRR57 pKa = 11.84QVTQSSNVGQGVRR70 pKa = 11.84VLSVDD75 pKa = 3.6QLRR78 pKa = 11.84SAYY81 pKa = 10.48LDD83 pKa = 3.35EE84 pKa = 4.84QYY86 pKa = 10.96RR87 pKa = 11.84SQYY90 pKa = 11.38SDD92 pKa = 3.27FCSSEE97 pKa = 3.51YY98 pKa = 9.38RR99 pKa = 11.84TQGLSYY105 pKa = 11.06LEE107 pKa = 4.71DD108 pKa = 4.3LFDD111 pKa = 4.42EE112 pKa = 5.49LDD114 pKa = 4.31DD115 pKa = 4.16NTSLTASISDD125 pKa = 3.84FFDD128 pKa = 3.69ALSDD132 pKa = 3.86FAGDD136 pKa = 3.78TTSEE140 pKa = 4.12AARR143 pKa = 11.84TTVQQTARR151 pKa = 11.84SMTDD155 pKa = 3.24NFNMIYY161 pKa = 10.89GEE163 pKa = 4.49MVDD166 pKa = 5.57LYY168 pKa = 11.01NDD170 pKa = 3.18QNTSVRR176 pKa = 11.84TVAEE180 pKa = 4.29QISSLASQIADD191 pKa = 3.92LNATICDD198 pKa = 3.88YY199 pKa = 10.99EE200 pKa = 4.92RR201 pKa = 11.84SGVTANDD208 pKa = 3.65LRR210 pKa = 11.84DD211 pKa = 3.68QRR213 pKa = 11.84NLLLDD218 pKa = 3.84KK219 pKa = 11.13LSGYY223 pKa = 11.17SDD225 pKa = 3.92FTCSEE230 pKa = 4.27DD231 pKa = 3.24AKK233 pKa = 11.35GMVNVWIAGEE243 pKa = 3.94ALVDD247 pKa = 3.89GKK249 pKa = 8.79TAGSISITSAADD261 pKa = 4.06EE262 pKa = 4.81IDD264 pKa = 3.75TLCQQLSILNGGVLSAGIITPDD286 pKa = 3.87QEE288 pKa = 4.26TQRR291 pKa = 11.84DD292 pKa = 4.93GICSALQQISGKK304 pKa = 10.02ISCNVNADD312 pKa = 3.21GTASVSIDD320 pKa = 3.53YY321 pKa = 10.68VSASMTQVTDD331 pKa = 3.57SLVDD335 pKa = 3.86GSTCGSVSEE344 pKa = 4.37EE345 pKa = 3.66AVKK348 pKa = 10.94AFDD351 pKa = 3.87GADD354 pKa = 3.36MEE356 pKa = 5.12SVLKK360 pKa = 11.0LGEE363 pKa = 4.44TYY365 pKa = 11.09LNTDD369 pKa = 3.53TVSGGEE375 pKa = 4.07LFAHH379 pKa = 6.95LSLRR383 pKa = 11.84GGDD386 pKa = 3.54TSGDD390 pKa = 3.28AGVPYY395 pKa = 10.76YY396 pKa = 10.0IGRR399 pKa = 11.84LDD401 pKa = 3.73DD402 pKa = 3.83LARR405 pKa = 11.84TVAEE409 pKa = 4.28TVNEE413 pKa = 4.13CMNKK417 pKa = 9.88GYY419 pKa = 9.1TYY421 pKa = 10.34PDD423 pKa = 3.55EE424 pKa = 4.81EE425 pKa = 4.74NGFSSVTGTDD435 pKa = 2.52VDD437 pKa = 4.33LFADD441 pKa = 4.96FGNQYY446 pKa = 11.74ALVTAGNFSVSDD458 pKa = 3.9SVLSSVWNIAGSDD471 pKa = 3.91SEE473 pKa = 4.96IDD475 pKa = 3.67LSTDD479 pKa = 2.97STQTSNNKK487 pKa = 8.95VALLLADD494 pKa = 5.62LINNTDD500 pKa = 3.72YY501 pKa = 11.96GDD503 pKa = 3.87MLDD506 pKa = 4.52GLISHH511 pKa = 7.69LGQTVSGSQSLLDD524 pKa = 3.58TRR526 pKa = 11.84EE527 pKa = 4.01SLVEE531 pKa = 3.78STEE534 pKa = 3.86NQRR537 pKa = 11.84QSISGVSVDD546 pKa = 3.97EE547 pKa = 4.3EE548 pKa = 4.33AVNLIMYY555 pKa = 7.22QQTYY559 pKa = 8.23NACSRR564 pKa = 11.84VITTMDD570 pKa = 3.01QMLDD574 pKa = 3.22KK575 pKa = 10.66LINGTGTVGLL585 pKa = 4.32

Molecular weight: 62.36 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1W1Z0F6|A0A1W1Z0F6_9FIRM Stage II sporulation protein R OS=Papillibacter cinnamivorans DSM 12816 OX=1122930 GN=SAMN02745168_0836 PE=4 SV=1
MM1 pKa = 7.74WLYY4 pKa = 11.28KK5 pKa = 10.34LGRR8 pKa = 11.84SFRR11 pKa = 11.84YY12 pKa = 9.17AGRR15 pKa = 11.84GFAHH19 pKa = 6.11VLRR22 pKa = 11.84RR23 pKa = 11.84EE24 pKa = 3.98RR25 pKa = 11.84NLRR28 pKa = 11.84IHH30 pKa = 6.36LTAVFYY36 pKa = 10.16VSWAGILGRR45 pKa = 11.84LGGAEE50 pKa = 3.97WALLWICFAMVIGAEE65 pKa = 4.15LFNTAIEE72 pKa = 4.31TLGNAVTRR80 pKa = 11.84EE81 pKa = 4.02KK82 pKa = 11.33NEE84 pKa = 4.17TVGKK88 pKa = 10.29AKK90 pKa = 10.46DD91 pKa = 3.59VAAGAVLVCAVGSVGAAAGIFGCTGAWKK119 pKa = 8.72TVLRR123 pKa = 11.84SLGSSTPLSVIAIATVPAAILFIRR147 pKa = 11.84GRR149 pKa = 11.84GTWKK153 pKa = 10.6

Molecular weight: 16.35 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2640

0

2640

814393

29

4547

308.5

33.95

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

9.244 ± 0.049

1.421 ± 0.02

5.24 ± 0.031

6.855 ± 0.066

4.005 ± 0.038

8.224 ± 0.051

1.552 ± 0.018

6.286 ± 0.047

5.067 ± 0.045

9.893 ± 0.058

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.68 ± 0.025

3.43 ± 0.029

4.119 ± 0.032

2.72 ± 0.03

5.735 ± 0.063

6.45 ± 0.054

5.548 ± 0.067

7.126 ± 0.047

0.89 ± 0.018

3.514 ± 0.032
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski