Streptomyces lavendulae subsp. lavendulae

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Actinomycetia; Streptomycetales; Streptomycetaceae; Streptomyces; Streptomyces lavendulae

Average proteome isoelectric point is 6.53

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 7724 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A2K8PQU3|A0A2K8PQU3_STRLA Transglutaminase-activating metalloprotease OS=Streptomyces lavendulae subsp. lavendulae OX=58340 GN=SLAV_36570 PE=4 SV=1
MM1 pKa = 7.67SDD3 pKa = 4.01DD4 pKa = 3.8VLSIIPSDD12 pKa = 4.09PQWQPDD18 pKa = 3.57RR19 pKa = 11.84DD20 pKa = 3.91VVDD23 pKa = 3.83RR24 pKa = 11.84VIALVEE30 pKa = 4.03DD31 pKa = 4.57LAPGVVDD38 pKa = 4.49GVDD41 pKa = 3.45VEE43 pKa = 5.97IDD45 pKa = 3.76ATWHH49 pKa = 6.16DD50 pKa = 4.1VVTAVDD56 pKa = 3.84CGDD59 pKa = 3.28NLEE62 pKa = 5.37RR63 pKa = 11.84IGCPLCQAAIDD74 pKa = 4.13TEE76 pKa = 4.08WWGDD80 pKa = 3.64LLEE83 pKa = 4.24AHH85 pKa = 7.06CDD87 pKa = 3.71DD88 pKa = 5.08GFTTLAIEE96 pKa = 4.63VPCCGGSTTLDD107 pKa = 3.29VLDD110 pKa = 4.62YY111 pKa = 11.02DD112 pKa = 4.37WPCGFARR119 pKa = 11.84FEE121 pKa = 3.81IAIWNPEE128 pKa = 3.99RR129 pKa = 11.84LWFGEE134 pKa = 4.37GEE136 pKa = 4.19LTALADD142 pKa = 4.3LLGHH146 pKa = 5.93PVKK149 pKa = 10.59QIRR152 pKa = 11.84AHH154 pKa = 4.47VV155 pKa = 3.43

Molecular weight: 17.04 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A2K8PGU4|A0A2K8PGU4_STRLA Penicillin-insensitive transglycosylase OS=Streptomyces lavendulae subsp. lavendulae OX=58340 GN=pbpG PE=4 SV=1
MM1 pKa = 7.69SKK3 pKa = 9.0RR4 pKa = 11.84TFQPNNRR11 pKa = 11.84RR12 pKa = 11.84RR13 pKa = 11.84AKK15 pKa = 8.7THH17 pKa = 5.15GFRR20 pKa = 11.84LRR22 pKa = 11.84MRR24 pKa = 11.84TRR26 pKa = 11.84AGRR29 pKa = 11.84AILANRR35 pKa = 11.84RR36 pKa = 11.84SKK38 pKa = 10.78GRR40 pKa = 11.84AALSAA45 pKa = 3.96

Molecular weight: 5.22 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

7724

0

7724

2527622

29

11445

327.2

34.84

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

14.422 ± 0.048

0.802 ± 0.007

5.726 ± 0.022

5.637 ± 0.028

2.686 ± 0.015

9.811 ± 0.029

2.279 ± 0.016

2.927 ± 0.021

1.992 ± 0.024

10.472 ± 0.039

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.677 ± 0.011

1.644 ± 0.014

6.492 ± 0.03

2.587 ± 0.016

8.163 ± 0.034

4.856 ± 0.017

5.988 ± 0.023

8.313 ± 0.027

1.525 ± 0.012

2.001 ± 0.014
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski