Tobacco leaf chlorosis betasatellite

Taxonomy: Viruses; Tolecusatellitidae; Betasatellite

Average proteome isoelectric point is 5.93

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 1 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|I7CPF9|I7CPF9_9VIRU C1 OS=Tobacco leaf chlorosis betasatellite OX=1213187 GN=C1 PE=4 SV=1
MM1 pKa = 7.35FRR3 pKa = 11.84PTEE6 pKa = 3.66LTMTIKK12 pKa = 10.69YY13 pKa = 9.86DD14 pKa = 3.55NKK16 pKa = 9.82RR17 pKa = 11.84GMEE20 pKa = 3.79FTVNVRR26 pKa = 11.84LTNNYY31 pKa = 9.97SIIVQVDD38 pKa = 4.04LVSTRR43 pKa = 11.84SPAIAKK49 pKa = 7.86TKK51 pKa = 10.08FLIPYY56 pKa = 7.56GHH58 pKa = 7.1HH59 pKa = 6.83GFTGPFDD66 pKa = 4.31FNRR69 pKa = 11.84LEE71 pKa = 3.99EE72 pKa = 4.34RR73 pKa = 11.84VCQLLKK79 pKa = 11.14VMYY82 pKa = 9.34KK83 pKa = 10.38DD84 pKa = 2.94KK85 pKa = 10.24HH86 pKa = 5.53TGEE89 pKa = 4.36FRR91 pKa = 11.84QEE93 pKa = 4.03DD94 pKa = 4.14MVEE97 pKa = 4.27TIDD100 pKa = 3.74ILMMHH105 pKa = 7.28EE106 pKa = 4.77APVIDD111 pKa = 4.29INVHH115 pKa = 5.79DD116 pKa = 5.56LYY118 pKa = 11.42SVYY121 pKa = 10.54TSASVV126 pKa = 2.8

Molecular weight: 14.66 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|I7CPF9|I7CPF9_9VIRU C1 OS=Tobacco leaf chlorosis betasatellite OX=1213187 GN=C1 PE=4 SV=1
MM1 pKa = 7.35FRR3 pKa = 11.84PTEE6 pKa = 3.66LTMTIKK12 pKa = 10.69YY13 pKa = 9.86DD14 pKa = 3.55NKK16 pKa = 9.82RR17 pKa = 11.84GMEE20 pKa = 3.79FTVNVRR26 pKa = 11.84LTNNYY31 pKa = 9.97SIIVQVDD38 pKa = 4.04LVSTRR43 pKa = 11.84SPAIAKK49 pKa = 7.86TKK51 pKa = 10.08FLIPYY56 pKa = 7.56GHH58 pKa = 7.1HH59 pKa = 6.83GFTGPFDD66 pKa = 4.31FNRR69 pKa = 11.84LEE71 pKa = 3.99EE72 pKa = 4.34RR73 pKa = 11.84VCQLLKK79 pKa = 11.14VMYY82 pKa = 9.34KK83 pKa = 10.38DD84 pKa = 2.94KK85 pKa = 10.24HH86 pKa = 5.53TGEE89 pKa = 4.36FRR91 pKa = 11.84QEE93 pKa = 4.03DD94 pKa = 4.14MVEE97 pKa = 4.27TIDD100 pKa = 3.74ILMMHH105 pKa = 7.28EE106 pKa = 4.77APVIDD111 pKa = 4.29INVHH115 pKa = 5.79DD116 pKa = 5.56LYY118 pKa = 11.42SVYY121 pKa = 10.54TSASVV126 pKa = 2.8

Molecular weight: 14.66 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

1

0

1

126

126

126

126.0

14.66

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

3.175 ± 0.0

0.794 ± 0.0

6.349 ± 0.0

6.349 ± 0.0

5.556 ± 0.0

3.968 ± 0.0

3.968 ± 0.0

7.143 ± 0.0

5.556 ± 0.0

7.143 ± 0.0

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

5.556 ± 0.0

4.762 ± 0.0

3.968 ± 0.0

2.381 ± 0.0

5.556 ± 0.0

4.762 ± 0.0

8.73 ± 0.0

9.524 ± 0.0

0.0 ± 0.0

4.762 ± 0.0
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski