Olive latent virus 1

Taxonomy: Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Tolucaviricetes; Tolivirales; Tombusviridae; Procedovirinae; Alphanecrovirus

Average proteome isoelectric point is 8.42

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 5 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|Q83941|Q83941_9TOMB p6 OS=Olive latent virus 1 OX=47669 PE=4 SV=1
MM1 pKa = 8.39DD2 pKa = 3.84YY3 pKa = 9.22QTEE6 pKa = 4.13VSEE9 pKa = 5.25DD10 pKa = 3.54NVSVRR15 pKa = 11.84GRR17 pKa = 11.84ARR19 pKa = 11.84RR20 pKa = 11.84GTEE23 pKa = 3.88DD24 pKa = 3.32KK25 pKa = 10.69KK26 pKa = 10.52HH27 pKa = 6.16NGSGLTGVKK36 pKa = 9.46RR37 pKa = 11.84HH38 pKa = 5.83AVSEE42 pKa = 4.39TSQKK46 pKa = 9.9SQSRR50 pKa = 11.84YY51 pKa = 6.17WSNGTMTNIAEE62 pKa = 4.27EE63 pKa = 3.98QTITVTYY70 pKa = 10.55NFNFF74 pKa = 3.71

Molecular weight: 8.39 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|Q83940|Q83940_9TOMB Uncharacterized protein OS=Olive latent virus 1 OX=47669 PE=4 SV=1
MM1 pKa = 7.66EE2 pKa = 6.2LPNQHH7 pKa = 6.32KK8 pKa = 8.46QTAAEE13 pKa = 4.35GFVSFLNWLCNPWRR27 pKa = 11.84RR28 pKa = 11.84QRR30 pKa = 11.84TVNAAVAFQNSILAIEE46 pKa = 4.52DD47 pKa = 3.53VEE49 pKa = 4.23HH50 pKa = 7.04FEE52 pKa = 6.3DD53 pKa = 3.88INEE56 pKa = 4.14CFEE59 pKa = 4.24EE60 pKa = 4.73SSGGQSQRR68 pKa = 11.84TKK70 pKa = 10.67VVAEE74 pKa = 4.2GAYY77 pKa = 10.54SPVKK81 pKa = 9.96SEE83 pKa = 3.46RR84 pKa = 11.84TRR86 pKa = 11.84RR87 pKa = 11.84VRR89 pKa = 11.84KK90 pKa = 9.76QKK92 pKa = 11.08AKK94 pKa = 9.41FVKK97 pKa = 10.51YY98 pKa = 10.14LVNEE102 pKa = 3.83ARR104 pKa = 11.84AEE106 pKa = 4.09FGLPKK111 pKa = 9.72ATEE114 pKa = 4.06ANRR117 pKa = 11.84LMVQHH122 pKa = 6.67FLLRR126 pKa = 11.84RR127 pKa = 11.84CKK129 pKa = 10.08DD130 pKa = 2.97WGVVTSQCHH139 pKa = 4.95NNVALALTLVFVPTGDD155 pKa = 4.03DD156 pKa = 3.15LLARR160 pKa = 11.84VVMNTYY166 pKa = 8.26KK167 pKa = 10.13TRR169 pKa = 11.84SAVRR173 pKa = 11.84GMDD176 pKa = 3.52NLQGEE181 pKa = 4.94GWWNNRR187 pKa = 11.84LGIGGQAGLAFRR199 pKa = 11.84AKK201 pKa = 10.47

Molecular weight: 22.73 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

5

0

5

1324

56

723

264.8

29.89

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.722 ± 0.919

1.964 ± 0.219

3.625 ± 0.208

5.514 ± 0.848

4.532 ± 0.197

6.949 ± 0.334

2.417 ± 0.46

4.532 ± 0.788

5.287 ± 0.957

8.233 ± 0.999

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.417 ± 0.133

5.589 ± 0.38

4.607 ± 0.859

5.211 ± 0.1

6.571 ± 0.397

6.495 ± 0.459

6.269 ± 1.094

7.779 ± 0.377

1.586 ± 0.192

3.625 ± 0.379
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski