Aestuariivirga litoralis

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Alphaproteobacteria; Hyphomicrobiales; Aestuariivirgaceae; Aestuariivirga

Average proteome isoelectric point is 6.72

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3996 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A2W2ASP7|A0A2W2ASP7_9RHIZ Alpha/beta hydrolase OS=Aestuariivirga litoralis OX=2650924 GN=DK847_12840 PE=4 SV=1
MM1 pKa = 7.61LYY3 pKa = 10.93VMSTAASAATLDD15 pKa = 3.9FTLTTSKK22 pKa = 10.54PVIVTGTPRR31 pKa = 11.84LAIDD35 pKa = 3.18VGGVTRR41 pKa = 11.84HH42 pKa = 6.08ADD44 pKa = 3.39YY45 pKa = 9.21TAGSGTTALTFSYY58 pKa = 10.9AVGAGDD64 pKa = 4.39FDD66 pKa = 5.71ANGISLVPPLDD77 pKa = 3.96LNGGSLTDD85 pKa = 3.52ASGNAVGSLAFTAPDD100 pKa = 3.34TSGIRR105 pKa = 11.84IQTYY109 pKa = 8.12TAAFDD114 pKa = 3.78TATVTSANAAALSFRR129 pKa = 11.84IAKK132 pKa = 9.64APPGGSYY139 pKa = 10.18SYY141 pKa = 10.96SITSSGGAGTVTGSGTISASPQVVSGVDD169 pKa = 3.53VTSLAVGTLTLSVTVSTAAGGTGAARR195 pKa = 11.84QATAAFDD202 pKa = 3.73NVAPSGYY209 pKa = 9.75SAAFLTSPVTSLNSSAAGFEE229 pKa = 4.31LTGGEE234 pKa = 3.76IGASYY239 pKa = 10.56SYY241 pKa = 11.24AIGSSGGGVPVTGSGTVSADD261 pKa = 3.28PQQITGLDD269 pKa = 3.64LSGLGDD275 pKa = 3.66GTLTLSVTLTDD286 pKa = 3.68TVGNAGAAATATALKK301 pKa = 9.18DD302 pKa = 3.53TASPTIVSVTPPAAGTYY319 pKa = 10.73DD320 pKa = 3.67DD321 pKa = 4.77LL322 pKa = 6.74

Molecular weight: 30.94 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A2W2AME5|A0A2W2AME5_9RHIZ Hemerythrin domain-containing protein OS=Aestuariivirga litoralis OX=2650924 GN=DK847_12205 PE=4 SV=1
MM1 pKa = 7.35KK2 pKa = 9.43RR3 pKa = 11.84TYY5 pKa = 10.27QPSKK9 pKa = 9.73LVRR12 pKa = 11.84KK13 pKa = 9.15RR14 pKa = 11.84RR15 pKa = 11.84HH16 pKa = 4.42GFRR19 pKa = 11.84ARR21 pKa = 11.84MATVGGRR28 pKa = 11.84NVLARR33 pKa = 11.84RR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 9.93GRR39 pKa = 11.84KK40 pKa = 8.85RR41 pKa = 11.84LSAA44 pKa = 3.96

Molecular weight: 5.18 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3996

0

3996

1285438

18

2121

321.7

34.89

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

12.531 ± 0.055

0.934 ± 0.013

5.429 ± 0.029

5.484 ± 0.035

3.731 ± 0.023

8.703 ± 0.036

2.12 ± 0.02

5.095 ± 0.03

3.774 ± 0.037

10.089 ± 0.046

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.662 ± 0.018

2.654 ± 0.021

5.291 ± 0.027

3.114 ± 0.022

6.708 ± 0.035

5.249 ± 0.026

5.307 ± 0.03

7.355 ± 0.034

1.449 ± 0.016

2.32 ± 0.02
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski