Desulfovibrio sp. OH1186_COT-070

Taxonomy: cellular organisms; Bacteria; Proteobacteria; delta/epsilon subdivisions; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio; unclassified Desulfovibrio

Average proteome isoelectric point is 6.9

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2373 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A3P2A4F8|A0A3P2A4F8_9DELT Uncharacterized protein OS=Desulfovibrio sp. OH1186_COT-070 OX=2491045 GN=EII23_00570 PE=4 SV=1
MM1 pKa = 7.12QNKK4 pKa = 9.61EE5 pKa = 4.13YY6 pKa = 10.9LHH8 pKa = 6.66AAAKK12 pKa = 10.47AIAQQIEE19 pKa = 4.4GNLLVIGVSLDD30 pKa = 3.56PDD32 pKa = 3.45VADD35 pKa = 3.29YY36 pKa = 10.32MGAFEE41 pKa = 5.04EE42 pKa = 4.49EE43 pKa = 4.98AITLADD49 pKa = 3.69VVEE52 pKa = 5.26DD53 pKa = 3.94GLLTVTNSGEE63 pKa = 3.92VMYY66 pKa = 10.99VGNNN70 pKa = 3.11

Molecular weight: 7.47 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A3P1ZXK6|A0A3P1ZXK6_9DELT Recombinase family protein OS=Desulfovibrio sp. OH1186_COT-070 OX=2491045 GN=EII23_03890 PE=4 SV=1
MM1 pKa = 7.76RR2 pKa = 11.84HH3 pKa = 6.22PPLPAPLLWQSLLGFWILGILAVAWPVPSASCAFLLFLADD43 pKa = 3.36ARR45 pKa = 11.84LWRR48 pKa = 11.84AKK50 pKa = 10.77GIFAALAVLLAGVLAGHH67 pKa = 7.22LTTGKK72 pKa = 8.18MWRR75 pKa = 11.84DD76 pKa = 3.44HH77 pKa = 6.32TPTPVAWLDD86 pKa = 3.62TAPKK90 pKa = 10.3SMRR93 pKa = 11.84ICGQIQEE100 pKa = 4.39VRR102 pKa = 11.84GLPDD106 pKa = 2.93NRR108 pKa = 11.84IRR110 pKa = 11.84MLLADD115 pKa = 4.02VRR117 pKa = 11.84PHH119 pKa = 6.47GGAEE123 pKa = 3.96KK124 pKa = 10.52SLSGLMEE131 pKa = 4.11WTWQNPSAYY140 pKa = 8.68PLPGQSACLSRR151 pKa = 11.84RR152 pKa = 11.84PQAMQGFANPGLPDD166 pKa = 4.01RR167 pKa = 11.84DD168 pKa = 3.52VVIQSVRR175 pKa = 11.84NVRR178 pKa = 11.84WRR180 pKa = 11.84IWSQGEE186 pKa = 4.12SGQPRR191 pKa = 11.84IDD193 pKa = 3.75GQPSLSARR201 pKa = 11.84WRR203 pKa = 11.84EE204 pKa = 3.97SLRR207 pKa = 11.84QGFFTVLSPDD217 pKa = 3.5AEE219 pKa = 4.16HH220 pKa = 7.26FPRR223 pKa = 11.84QKK225 pKa = 10.64LPQGKK230 pKa = 9.82AILVALLFGDD240 pKa = 4.4RR241 pKa = 11.84QFLDD245 pKa = 3.36NQTIAGFSMAALGHH259 pKa = 5.87SLALSGQHH267 pKa = 6.35LAVAGLAGILLVVVVARR284 pKa = 11.84AYY286 pKa = 9.86PGIYY290 pKa = 9.79LCRR293 pKa = 11.84TRR295 pKa = 11.84TVWVMSASVPPALAYY310 pKa = 10.37LWLGNAPPSLVRR322 pKa = 11.84ATIMLCILALWLLRR336 pKa = 11.84RR337 pKa = 11.84RR338 pKa = 11.84VHH340 pKa = 5.12TTLDD344 pKa = 3.73VLCSALFCITLFSPAAVFDD363 pKa = 3.81TGLQLSAICVAVIGMSMPWLRR384 pKa = 11.84RR385 pKa = 11.84LLPRR389 pKa = 11.84PHH391 pKa = 6.91PAEE394 pKa = 3.99HH395 pKa = 6.4AARR398 pKa = 11.84WRR400 pKa = 11.84SLLQDD405 pKa = 4.43ALWSLQRR412 pKa = 11.84IFALSLIIQTVLLPVGILLFGNTGHH437 pKa = 7.51WFPLNVLWLPLVNLLVLPGAALGLLAGACGWDD469 pKa = 3.18AAARR473 pKa = 11.84AILEE477 pKa = 4.34YY478 pKa = 10.93ASLPCQWLADD488 pKa = 3.83ALAWLARR495 pKa = 11.84QNALEE500 pKa = 4.23SPVVLRR506 pKa = 11.84PHH508 pKa = 6.04WTALPAFAALTAAAALRR525 pKa = 11.84GGRR528 pKa = 11.84LRR530 pKa = 11.84LPPAGRR536 pKa = 11.84RR537 pKa = 11.84LLLAGALLLCAGPLLRR553 pKa = 11.84AGEE556 pKa = 4.13RR557 pKa = 11.84LSPEE561 pKa = 3.61VRR563 pKa = 11.84LDD565 pKa = 3.34ILDD568 pKa = 3.94VGQSQALLLRR578 pKa = 11.84LPGHH582 pKa = 6.05VRR584 pKa = 11.84LLLDD588 pKa = 4.0GSGSASPRR596 pKa = 11.84FDD598 pKa = 3.44PGKK601 pKa = 10.62SLVAPVLVHH610 pKa = 6.7NDD612 pKa = 3.29APRR615 pKa = 11.84LTAVLNSHH623 pKa = 7.66PDD625 pKa = 3.56LDD627 pKa = 4.14HH628 pKa = 6.79MGGLLYY634 pKa = 10.25ILRR637 pKa = 11.84HH638 pKa = 5.71FRR640 pKa = 11.84TQGLFDD646 pKa = 3.64NGKK649 pKa = 8.32NAKK652 pKa = 9.63GKK654 pKa = 9.17WGEE657 pKa = 3.89LWDD660 pKa = 3.89LTRR663 pKa = 11.84QKK665 pKa = 10.61HH666 pKa = 4.57AARR669 pKa = 11.84PLRR672 pKa = 11.84QGDD675 pKa = 3.9TLVLGEE681 pKa = 4.7PEE683 pKa = 3.7NGLRR687 pKa = 11.84LEE689 pKa = 4.17ILHH692 pKa = 6.61PPRR695 pKa = 11.84HH696 pKa = 6.29SEE698 pKa = 4.56DD699 pKa = 2.58KK700 pKa = 10.36WRR702 pKa = 11.84GNNASLVARR711 pKa = 11.84LLHH714 pKa = 6.22HH715 pKa = 6.45EE716 pKa = 4.39RR717 pKa = 11.84GLALFMGDD725 pKa = 3.21AEE727 pKa = 4.39RR728 pKa = 11.84PVLQRR733 pKa = 11.84LLAEE737 pKa = 4.52GLDD740 pKa = 3.62VRR742 pKa = 11.84AEE744 pKa = 4.0VLIAPHH750 pKa = 6.55HH751 pKa = 5.82GSYY754 pKa = 10.03TGFLPQFFQAVRR766 pKa = 11.84PQLVVASCGSRR777 pKa = 11.84YY778 pKa = 10.02AYY780 pKa = 9.33PDD782 pKa = 2.93KK783 pKa = 10.88KK784 pKa = 10.53LRR786 pKa = 11.84EE787 pKa = 4.17WLAEE791 pKa = 3.88NHH793 pKa = 6.22ISLAYY798 pKa = 8.4TSRR801 pKa = 11.84DD802 pKa = 3.14GAVRR806 pKa = 11.84IAWQRR811 pKa = 11.84AGQGFSLPRR820 pKa = 11.84ISTARR825 pKa = 11.84KK826 pKa = 8.65QKK828 pKa = 10.78

Molecular weight: 90.91 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2373

0

2373

758626

26

3022

319.7

35.04

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

11.204 ± 0.069

1.657 ± 0.026

5.071 ± 0.037

5.967 ± 0.049

3.827 ± 0.031

8.152 ± 0.048

2.337 ± 0.027

4.431 ± 0.046

3.862 ± 0.042

11.147 ± 0.057

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.658 ± 0.027

2.853 ± 0.036

5.245 ± 0.045

3.463 ± 0.027

7.046 ± 0.054

5.592 ± 0.031

4.752 ± 0.049

7.033 ± 0.043

1.317 ± 0.02

2.389 ± 0.027
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski