Hawaiian green turtle herpesvirus

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Peploviricota; Herviviricetes; Herpesvirales; Herpesviridae; Alphaherpesvirinae; Scutavirus; Chelonid alphaherpesvirus 5; Green turtle herpesvirus

Average proteome isoelectric point is 7.01

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 15 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|Q5ZR62|Q5ZR62_9ALPH Basic phosphorylated capsid protein OS=Hawaiian green turtle herpesvirus OX=70564 GN=UL35 PE=4 SV=1
TT1 pKa = 7.07AAGPVSEE8 pKa = 4.6TDD10 pKa = 3.29PVLRR14 pKa = 11.84SPLDD18 pKa = 3.52RR19 pKa = 11.84SEE21 pKa = 4.82LNARR25 pKa = 11.84DD26 pKa = 3.94ALLLLAAFCPWHH38 pKa = 5.71VALFARR44 pKa = 11.84LPHH47 pKa = 6.01VEE49 pKa = 3.84QLEE52 pKa = 4.66FVSKK56 pKa = 9.49TLEE59 pKa = 4.23PLLSEE64 pKa = 4.2AAVGRR69 pKa = 11.84LAVSRR74 pKa = 11.84LSGKK78 pKa = 9.74QGPRR82 pKa = 11.84LLPVLSADD90 pKa = 3.72EE91 pKa = 4.39EE92 pKa = 4.23KK93 pKa = 10.82SPRR96 pKa = 11.84VFGLRR101 pKa = 11.84LRR103 pKa = 11.84DD104 pKa = 3.19WRR106 pKa = 11.84SFQVTPSLTFPEE118 pKa = 4.07IWLQTGAAEE127 pKa = 4.2ATPSAEE133 pKa = 4.3GLRR136 pKa = 11.84EE137 pKa = 4.05LQRR140 pKa = 11.84LTDD143 pKa = 4.15DD144 pKa = 3.91GKK146 pKa = 11.16AFATLLYY153 pKa = 10.35ALAYY157 pKa = 9.77HH158 pKa = 6.59CVPPAILEE166 pKa = 4.27MLWNALRR173 pKa = 11.84PRR175 pKa = 11.84DD176 pKa = 4.21LPDD179 pKa = 3.55EE180 pKa = 4.68ADD182 pKa = 2.95ASIFYY187 pKa = 10.14RR188 pKa = 11.84QRR190 pKa = 11.84ALPGEE195 pKa = 4.24SFVVSEE201 pKa = 4.52STVALQTEE209 pKa = 4.51RR210 pKa = 11.84GEE212 pKa = 4.12IPPDD216 pKa = 3.1EE217 pKa = 4.66RR218 pKa = 11.84LWIPQARR225 pKa = 11.84ARR227 pKa = 11.84TLTVGEE233 pKa = 4.5TRR235 pKa = 11.84SKK237 pKa = 11.12APPCAFDD244 pKa = 3.38FAIFAVLTGVPLVIAATLAPGAGFSRR270 pKa = 11.84EE271 pKa = 3.88SGLFLGRR278 pKa = 11.84VLLDD282 pKa = 3.42ARR284 pKa = 11.84SGDD287 pKa = 3.5AVFDD291 pKa = 3.96EE292 pKa = 4.5VRR294 pKa = 11.84QAVSSDD300 pKa = 3.45VNFLAAIEE308 pKa = 4.64KK309 pKa = 9.89EE310 pKa = 4.18YY311 pKa = 11.05QPIEE315 pKa = 4.08NVCLKK320 pKa = 10.02EE321 pKa = 4.04QIVQISMEE329 pKa = 4.56LSRR332 pKa = 11.84QRR334 pKa = 11.84LKK336 pKa = 9.92TAAPLLVLVDD346 pKa = 3.85EE347 pKa = 4.64DD348 pKa = 4.87HH349 pKa = 7.2EE350 pKa = 4.83VTHH353 pKa = 7.07LLAEE357 pKa = 4.26NPKK360 pKa = 8.75TAEE363 pKa = 4.12KK364 pKa = 10.68EE365 pKa = 4.25LIFHH369 pKa = 6.31FRR371 pKa = 11.84VPEE374 pKa = 4.05MEE376 pKa = 4.31DD377 pKa = 3.15VRR379 pKa = 11.84IPSGAQEE386 pKa = 4.35TFLPSAPPPGDD397 pKa = 3.43PLFEE401 pKa = 4.29TALGFPPNAISYY413 pKa = 9.2EE414 pKa = 3.95RR415 pKa = 11.84DD416 pKa = 3.73GIEE419 pKa = 3.58GTLNHH424 pKa = 6.39RR425 pKa = 11.84PVYY428 pKa = 9.65EE429 pKa = 4.15KK430 pKa = 10.64RR431 pKa = 11.84PPTPEE436 pKa = 3.33IFTPPEE442 pKa = 4.03SPTTNSRR449 pKa = 11.84PRR451 pKa = 11.84WYY453 pKa = 9.73DD454 pKa = 3.21DD455 pKa = 4.6KK456 pKa = 11.49EE457 pKa = 4.47IEE459 pKa = 4.3DD460 pKa = 3.88WSFPSPPDD468 pKa = 3.26SPGFSEE474 pKa = 5.57PEE476 pKa = 3.85APPAKK481 pKa = 9.79PPVSTRR487 pKa = 11.84PIPPDD492 pKa = 3.28LVLSPRR498 pKa = 11.84DD499 pKa = 3.72AYY501 pKa = 10.04PVDD504 pKa = 3.75EE505 pKa = 5.56GGLGPIPEE513 pKa = 4.56EE514 pKa = 4.33GPLRR518 pKa = 11.84SLVRR522 pKa = 11.84RR523 pKa = 11.84SLLSLLEE530 pKa = 4.27KK531 pKa = 10.3IRR533 pKa = 11.84ALRR536 pKa = 11.84RR537 pKa = 11.84FAQKK541 pKa = 9.46TGEE544 pKa = 4.17SLLTDD549 pKa = 3.62IQRR552 pKa = 11.84IKK554 pKa = 11.06LFLRR558 pKa = 4.14

Molecular weight: 61.74 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|Q5ZR74|Q5ZR74_9ALPH Thymidine kinase (Fragment) OS=Hawaiian green turtle herpesvirus OX=70564 GN=UL23 PE=3 SV=2
MM1 pKa = 6.76NTLRR5 pKa = 11.84TRR7 pKa = 11.84GARR10 pKa = 11.84TSAFDD15 pKa = 3.7YY16 pKa = 9.7TSSRR20 pKa = 11.84AVKK23 pKa = 9.99KK24 pKa = 10.29RR25 pKa = 11.84RR26 pKa = 11.84LLAGVRR32 pKa = 11.84CHH34 pKa = 5.96EE35 pKa = 4.12RR36 pKa = 11.84FYY38 pKa = 11.8NLLTRR43 pKa = 11.84GSQQINAGRR52 pKa = 11.84PGAAAARR59 pKa = 11.84PLVRR63 pKa = 11.84ALGAAVDD70 pKa = 4.1CRR72 pKa = 11.84RR73 pKa = 11.84EE74 pKa = 3.91IIKK77 pKa = 9.52TGVICEE83 pKa = 3.98IDD85 pKa = 3.58LGPRR89 pKa = 11.84RR90 pKa = 11.84PDD92 pKa = 2.99CVIYY96 pKa = 10.44VRR98 pKa = 11.84RR99 pKa = 11.84ASPVPHH105 pKa = 6.98LLFLVEE111 pKa = 5.36LKK113 pKa = 10.77SCLHH117 pKa = 5.7TRR119 pKa = 11.84DD120 pKa = 3.01MATRR124 pKa = 11.84TKK126 pKa = 10.77ALQRR130 pKa = 11.84QEE132 pKa = 4.61GLGQLRR138 pKa = 11.84DD139 pKa = 3.46ARR141 pKa = 11.84ACLGRR146 pKa = 11.84LTPPGPEE153 pKa = 4.13PLLICPVLIFVAQKK167 pKa = 10.32GLRR170 pKa = 11.84ILAVQRR176 pKa = 11.84LPTVAASVHH185 pKa = 5.87FDD187 pKa = 2.94RR188 pKa = 11.84LLRR191 pKa = 11.84VLLGRR196 pKa = 11.84SCYY199 pKa = 9.85HH200 pKa = 5.91VRR202 pKa = 11.84TAPGSPLDD210 pKa = 3.9ARR212 pKa = 11.84SQRR215 pKa = 11.84SGARR219 pKa = 11.84GVAQPAKK226 pKa = 9.58PAAPSKK232 pKa = 10.58LPSIPRR238 pKa = 11.84SRR240 pKa = 11.84SNPRR244 pKa = 11.84SAGPRR249 pKa = 11.84RR250 pKa = 11.84SLAGQRR256 pKa = 11.84RR257 pKa = 11.84AARR260 pKa = 11.84PKK262 pKa = 9.03VRR264 pKa = 11.84GAGSHH269 pKa = 4.78GTAGGKK275 pKa = 9.58HH276 pKa = 5.77FDD278 pKa = 3.9HH279 pKa = 7.8RR280 pKa = 11.84SGSNNAAGRR289 pKa = 11.84AGRR292 pKa = 11.84GRR294 pKa = 11.84FKK296 pKa = 10.86NRR298 pKa = 11.84RR299 pKa = 11.84GPGSRR304 pKa = 11.84AGGRR308 pKa = 11.84ALPANN313 pKa = 4.1

Molecular weight: 33.79 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

15

0

15

7492

111

1091

499.5

55.84

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

9.797 ± 0.568

1.962 ± 0.265

4.979 ± 0.335

6.887 ± 0.439

4.805 ± 0.241

6.1 ± 0.377

1.895 ± 0.162

2.803 ± 0.249

3.991 ± 0.253

10.918 ± 0.601

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.522 ± 0.165

3.217 ± 0.359

6.313 ± 0.814

3.31 ± 0.193

8.649 ± 0.539

6.38 ± 0.375

5.539 ± 0.294

6.874 ± 0.37

0.921 ± 0.127

3.137 ± 0.256
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski