Actinobacillus delphinicola

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Pasteurellales; Pasteurellaceae; Actinobacillus

Average proteome isoelectric point is 6.71

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 1624 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A448TRR2|A0A448TRR2_9PAST Adenine phosphoribosyltransferase OS=Actinobacillus delphinicola OX=51161 GN=apt PE=3 SV=1
MM1 pKa = 7.68AIIGLFYY8 pKa = 10.97GSDD11 pKa = 3.23TGNTEE16 pKa = 4.47NIAKK20 pKa = 9.26MIQKK24 pKa = 9.89NLGKK28 pKa = 10.23DD29 pKa = 3.33VVDD32 pKa = 3.91IFDD35 pKa = 3.57IAKK38 pKa = 10.18SSKK41 pKa = 10.55EE42 pKa = 4.15DD43 pKa = 3.15IQKK46 pKa = 10.51YY47 pKa = 10.35DD48 pKa = 3.67FLILGIPTWYY58 pKa = 10.37YY59 pKa = 11.64GEE61 pKa = 4.69AQCDD65 pKa = 3.26WDD67 pKa = 5.58DD68 pKa = 4.04FFPTLGEE75 pKa = 3.68IDD77 pKa = 3.9FTDD80 pKa = 3.31KK81 pKa = 10.89LVAIFGCGDD90 pKa = 3.25QEE92 pKa = 5.04DD93 pKa = 4.3YY94 pKa = 11.79AEE96 pKa = 4.32YY97 pKa = 10.5FCDD100 pKa = 3.87AMGTIRR106 pKa = 11.84DD107 pKa = 3.65IIEE110 pKa = 4.13PKK112 pKa = 10.29GAIIVGNWSTEE123 pKa = 3.93GYY125 pKa = 10.27SFEE128 pKa = 4.81SSQACIDD135 pKa = 3.48EE136 pKa = 4.31KK137 pKa = 10.72TFVGLCIDD145 pKa = 4.19EE146 pKa = 4.82DD147 pKa = 4.01RR148 pKa = 11.84QPEE151 pKa = 4.25LTDD154 pKa = 3.1EE155 pKa = 5.79RR156 pKa = 11.84VATWCKK162 pKa = 9.65QLQDD166 pKa = 3.88EE167 pKa = 4.59MCLAEE172 pKa = 4.97LVV174 pKa = 3.65

Molecular weight: 19.66 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A448TUU9|A0A448TUU9_9PAST Heptosyltransferase OS=Actinobacillus delphinicola OX=51161 GN=waaQ PE=4 SV=1
MM1 pKa = 7.45KK2 pKa = 9.51RR3 pKa = 11.84TFQPSVLKK11 pKa = 10.68RR12 pKa = 11.84NRR14 pKa = 11.84THH16 pKa = 7.28GFRR19 pKa = 11.84ARR21 pKa = 11.84MATKK25 pKa = 10.4NGRR28 pKa = 11.84QVLARR33 pKa = 11.84RR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 10.15GRR39 pKa = 11.84KK40 pKa = 8.87SLSAA44 pKa = 3.86

Molecular weight: 5.13 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

1624

0

1624

538582

29

4991

331.6

37.03

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.368 ± 0.097

1.032 ± 0.028

5.253 ± 0.048

5.882 ± 0.087

4.368 ± 0.069

6.65 ± 0.11

2.223 ± 0.026

7.19 ± 0.071

6.435 ± 0.055

10.254 ± 0.112

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.491 ± 0.039

5.032 ± 0.104

3.892 ± 0.042

4.757 ± 0.056

4.213 ± 0.066

5.54 ± 0.058

5.636 ± 0.096

6.491 ± 0.054

1.1 ± 0.026

3.194 ± 0.046
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski