Phytohabitans houttuyneae

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Actinomycetia; Micromonosporales; Micromonosporaceae; Phytohabitans

Average proteome isoelectric point is 6.62

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 10523 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A6V8K413|A0A6V8K413_9ACTN Glucosylceramidase OS=Phytohabitans houttuyneae OX=1076126 GN=srfJ PE=3 SV=1
MM1 pKa = 7.86SEE3 pKa = 4.59FDD5 pKa = 5.56DD6 pKa = 4.04PTLTEE11 pKa = 4.7DD12 pKa = 3.99PGTGHH17 pKa = 6.91EE18 pKa = 4.73GFGHH22 pKa = 6.68AGDD25 pKa = 4.87GGHH28 pKa = 6.33EE29 pKa = 4.2PGYY32 pKa = 10.02DD33 pKa = 3.29QPGYY37 pKa = 9.27EE38 pKa = 4.51QPTHH42 pKa = 6.31DD43 pKa = 4.31TPPYY47 pKa = 9.97GHH49 pKa = 7.58DD50 pKa = 3.29EE51 pKa = 3.86PHH53 pKa = 6.9YY54 pKa = 9.59EE55 pKa = 4.21EE56 pKa = 4.67PHH58 pKa = 7.02HH59 pKa = 6.77GEE61 pKa = 4.09PDD63 pKa = 3.74SIVQKK68 pKa = 10.96NPDD71 pKa = 3.24GSTDD75 pKa = 3.45VVVDD79 pKa = 4.4LNGDD83 pKa = 4.0GYY85 pKa = 11.69ADD87 pKa = 3.88VVQHH91 pKa = 7.25DD92 pKa = 4.47SDD94 pKa = 4.14SDD96 pKa = 4.11GYY98 pKa = 11.82ADD100 pKa = 3.53TTYY103 pKa = 11.07VDD105 pKa = 3.95SNHH108 pKa = 7.24DD109 pKa = 3.47GRR111 pKa = 11.84LDD113 pKa = 4.05TILKK117 pKa = 10.57DD118 pKa = 3.71YY119 pKa = 11.36DD120 pKa = 4.09DD121 pKa = 6.47DD122 pKa = 6.58GDD124 pKa = 4.29LDD126 pKa = 4.31AAFADD131 pKa = 4.28TNADD135 pKa = 3.06GRR137 pKa = 11.84VDD139 pKa = 3.53YY140 pKa = 10.95AAADD144 pKa = 3.97LNDD147 pKa = 4.46DD148 pKa = 3.57NRR150 pKa = 11.84VDD152 pKa = 4.84HH153 pKa = 6.18VTLDD157 pKa = 3.17TDD159 pKa = 4.03YY160 pKa = 11.57DD161 pKa = 4.02GKK163 pKa = 11.07ADD165 pKa = 3.43TWIADD170 pKa = 3.07VDD172 pKa = 4.13YY173 pKa = 11.23DD174 pKa = 4.23GKK176 pKa = 10.26PDD178 pKa = 3.48VAFVDD183 pKa = 4.32TNHH186 pKa = 7.44DD187 pKa = 3.64GTPDD191 pKa = 3.4VAVTDD196 pKa = 4.18TNHH199 pKa = 7.37DD200 pKa = 3.88GTPEE204 pKa = 3.85QQPVNPYY211 pKa = 9.82AASS214 pKa = 3.26

Molecular weight: 23.12 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A6V8KUQ9|A0A6V8KUQ9_9ACTN Uncharacterized protein OS=Phytohabitans houttuyneae OX=1076126 GN=Phou_084950 PE=4 SV=1
MM1 pKa = 7.36TGTRR5 pKa = 11.84LRR7 pKa = 11.84RR8 pKa = 11.84PAVPGLSVPRR18 pKa = 11.84TGLPVARR25 pKa = 11.84TGLPVARR32 pKa = 11.84SGLSTAGTGLFVRR45 pKa = 11.84RR46 pKa = 11.84ARR48 pKa = 11.84LPAARR53 pKa = 11.84SWRR56 pKa = 11.84LTSAGWRR63 pKa = 11.84GSARR67 pKa = 11.84RR68 pKa = 11.84RR69 pKa = 11.84AAFPAGPSAAGLEE82 pKa = 4.25PLVRR86 pKa = 11.84AAVTTRR92 pKa = 11.84PRR94 pKa = 11.84LVSWPAAAVAAARR107 pKa = 11.84TRR109 pKa = 11.84AGPPLAAA116 pKa = 5.27

Molecular weight: 11.94 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

10523

0

10523

3370841

39

8146

320.3

34.22

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

14.207 ± 0.04

0.782 ± 0.007

5.946 ± 0.019

5.006 ± 0.025

2.74 ± 0.014

9.367 ± 0.03

2.151 ± 0.014

3.247 ± 0.016

1.634 ± 0.017

10.203 ± 0.037

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.686 ± 0.01

1.84 ± 0.018

6.278 ± 0.023

2.73 ± 0.012

8.346 ± 0.029

4.983 ± 0.02

6.138 ± 0.025

8.886 ± 0.024

1.683 ± 0.01

2.146 ± 0.013
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski