[Candida] arabinofermentans NRRL YB-2248

Taxonomy: cellular organisms; Eukaryota; Opisthokonta; Fungi; Dikarya; Ascomycota; saccharomyceta; Saccharomycotina; Saccharomycetes; Saccharomycetales; Pichiaceae; Ogataea; Ogataea/Candida clade; [Candida] arabinofermentans

Average proteome isoelectric point is 6.27

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 5827 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1E4SYK6|A0A1E4SYK6_9ASCO Sm domain-containing protein OS=[Candida] arabinofermentans NRRL YB-2248 OX=983967 GN=CANARDRAFT_200819 PE=3 SV=1
MM1 pKa = 7.14NRR3 pKa = 11.84STSTSEE9 pKa = 3.63IQSISASSIITDD21 pKa = 3.76TDD23 pKa = 3.01EE24 pKa = 4.18SAYY27 pKa = 9.65FTDD30 pKa = 4.32ADD32 pKa = 3.88SHH34 pKa = 5.78FTDD37 pKa = 5.12TEE39 pKa = 4.44LNDD42 pKa = 4.14NNNDD46 pKa = 3.43NNNNNGIADD55 pKa = 4.08SVGDD59 pKa = 3.97GAPLSTQVTATDD71 pKa = 3.81NNNDD75 pKa = 3.48NNDD78 pKa = 3.39IADD81 pKa = 3.61QTIVEE86 pKa = 4.37SHH88 pKa = 5.75QLPNNDD94 pKa = 4.44NNDD97 pKa = 2.94IDD99 pKa = 3.93QRR101 pKa = 11.84SGNVPITPDD110 pKa = 3.81DD111 pKa = 4.48VISIQPKK118 pKa = 9.12KK119 pKa = 9.98QLEE122 pKa = 4.19PTMSNNEE129 pKa = 3.8NNKK132 pKa = 10.02AFISTDD138 pKa = 3.47DD139 pKa = 3.76NNAAIADD146 pKa = 3.75ASVQVGDD153 pKa = 4.63DD154 pKa = 3.88NEE156 pKa = 4.0ILAQKK161 pKa = 10.19RR162 pKa = 11.84GYY164 pKa = 9.89QRR166 pKa = 11.84DD167 pKa = 3.29EE168 pKa = 4.6SEE170 pKa = 4.04CHH172 pKa = 6.21EE173 pKa = 4.6YY174 pKa = 11.01YY175 pKa = 11.13CNFTCFDD182 pKa = 4.47DD183 pKa = 4.72LKK185 pKa = 10.76CDD187 pKa = 3.43SGEE190 pKa = 4.6NICIMCFSCLVSSFTSVCISLCQSSASKK218 pKa = 10.86

Molecular weight: 23.74 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1E4T4N6|A0A1E4T4N6_9ASCO G-patch domain-containing protein OS=[Candida] arabinofermentans NRRL YB-2248 OX=983967 GN=CANARDRAFT_6210 PE=3 SV=1
MM1 pKa = 7.94PSQKK5 pKa = 10.41SFRR8 pKa = 11.84TKK10 pKa = 10.38QKK12 pKa = 10.07LAKK15 pKa = 9.76AQNQNRR21 pKa = 11.84PLPQWIRR28 pKa = 11.84LRR30 pKa = 11.84TNNKK34 pKa = 8.41IRR36 pKa = 11.84YY37 pKa = 5.78NAKK40 pKa = 8.42RR41 pKa = 11.84RR42 pKa = 11.84HH43 pKa = 4.6WKK45 pKa = 8.07RR46 pKa = 11.84TKK48 pKa = 10.75LGII51 pKa = 3.98

Molecular weight: 6.29 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

5824

3

5827

2735454

49

5024

469.4

52.96

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.185 ± 0.031

1.193 ± 0.012

6.201 ± 0.026

6.52 ± 0.031

4.411 ± 0.021

5.094 ± 0.029

1.933 ± 0.013

6.908 ± 0.025

7.29 ± 0.03

9.808 ± 0.035

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.065 ± 0.01

5.971 ± 0.026

4.209 ± 0.025

4.138 ± 0.034

3.873 ± 0.019

9.374 ± 0.038

5.939 ± 0.025

5.43 ± 0.022

0.96 ± 0.008

3.49 ± 0.018
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski