Avian gyrovirus 2

Taxonomy: Viruses; Anelloviridae; Gyrovirus; Gyrovirus galga1

Average proteome isoelectric point is 8.1

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|F4ZDR1|F4ZDR1_9VIRU Apoptin OS=Avian gyrovirus 2 OX=1002273 PE=3 SV=1
MM1 pKa = 7.59SSGGLGDD8 pKa = 4.8CSACEE13 pKa = 3.67TRR15 pKa = 11.84AAGGSEE21 pKa = 3.92LPLRR25 pKa = 11.84QEE27 pKa = 4.35GQLGPSGAGSTGKK40 pKa = 7.95TLNADD45 pKa = 3.69PPLSPTSNNYY55 pKa = 8.18SVRR58 pKa = 11.84TINGIRR64 pKa = 11.84ASNKK68 pKa = 8.95FVSASRR74 pKa = 11.84NDD76 pKa = 3.88LDD78 pKa = 5.91RR79 pKa = 11.84DD80 pKa = 4.07PNWYY84 pKa = 9.29RR85 pKa = 11.84VNYY88 pKa = 9.29NYY90 pKa = 10.68SIATWLRR97 pKa = 11.84QCARR101 pKa = 11.84SHH103 pKa = 7.67DD104 pKa = 4.46EE105 pKa = 3.53ICTCGRR111 pKa = 11.84WRR113 pKa = 11.84SHH115 pKa = 5.33WFQEE119 pKa = 3.82ASGLVTQEE127 pKa = 3.95TQTDD131 pKa = 3.54QLARR135 pKa = 11.84DD136 pKa = 3.72LRR138 pKa = 11.84RR139 pKa = 11.84LQRR142 pKa = 11.84KK143 pKa = 9.41GEE145 pKa = 3.89AAKK148 pKa = 10.59RR149 pKa = 11.84KK150 pKa = 9.51LDD152 pKa = 3.5YY153 pKa = 10.64LKK155 pKa = 10.87RR156 pKa = 11.84RR157 pKa = 11.84GTPHH161 pKa = 7.49KK162 pKa = 9.42KK163 pKa = 8.53TKK165 pKa = 9.22TVTWQDD171 pKa = 3.18YY172 pKa = 11.46DD173 pKa = 5.45DD174 pKa = 6.12DD175 pKa = 5.46DD176 pKa = 5.81LVDD179 pKa = 4.52ALASTTEE186 pKa = 4.14DD187 pKa = 4.28DD188 pKa = 3.91GTGDD192 pKa = 3.6TDD194 pKa = 4.13CDD196 pKa = 3.21EE197 pKa = 4.65DD198 pKa = 5.2AIPGGVNFDD207 pKa = 3.83MRR209 pKa = 11.84VEE211 pKa = 4.51DD212 pKa = 4.34PLIAALRR219 pKa = 11.84GGSSTHH225 pKa = 5.48TRR227 pKa = 11.84APMWW231 pKa = 4.0

Molecular weight: 25.49 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|F4ZDR2|F4ZDR2_9VIRU CA1 OS=Avian gyrovirus 2 OX=1002273 GN=VP1 PE=3 SV=1
MM1 pKa = 6.13QTPRR5 pKa = 11.84SRR7 pKa = 11.84RR8 pKa = 11.84QATTTRR14 pKa = 11.84SEE16 pKa = 3.99LLTAYY21 pKa = 7.49EE22 pKa = 5.27HH23 pKa = 6.65PTSSCPPAEE32 pKa = 4.21TTSIEE37 pKa = 3.89IQIGIGSTIITLSLPGYY54 pKa = 9.93ASVRR58 pKa = 11.84VLTTRR63 pKa = 11.84SAPADD68 pKa = 3.91DD69 pKa = 4.62GGVTGSRR76 pKa = 11.84RR77 pKa = 11.84LADD80 pKa = 3.39SSHH83 pKa = 5.87RR84 pKa = 11.84RR85 pKa = 11.84PRR87 pKa = 11.84RR88 pKa = 11.84TSSPEE93 pKa = 3.4IYY95 pKa = 10.42VGFSAKK101 pKa = 8.49EE102 pKa = 3.68RR103 pKa = 11.84RR104 pKa = 11.84QKK106 pKa = 11.19EE107 pKa = 3.7NLITLRR113 pKa = 11.84EE114 pKa = 4.1EE115 pKa = 4.39GPPIKK120 pKa = 10.26KK121 pKa = 9.87LRR123 pKa = 11.84LL124 pKa = 3.44

Molecular weight: 13.67 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3

0

3

815

124

460

271.7

30.72

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.607 ± 0.345

1.718 ± 0.374

5.031 ± 1.964

3.558 ± 1.243

3.313 ± 1.321

7.607 ± 0.601

2.209 ± 0.313

3.313 ± 1.082

3.926 ± 0.21

7.239 ± 0.395

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.331 ± 0.734

3.681 ± 0.785

7.485 ± 1.299

5.031 ± 0.839

9.939 ± 0.81

7.362 ± 1.56

7.853 ± 1.406

4.54 ± 0.7

2.945 ± 0.927

3.313 ± 0.47
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski