Capybara microvirus Cap3_SP_475

Taxonomy: Viruses; Monodnaviria; Sangervirae; Phixviricota; Malgrandaviricetes; Petitvirales; Microviridae; unclassified Microviridae

Average proteome isoelectric point is 6.87

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 6 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A4V1FVU2|A0A4V1FVU2_9VIRU Minor capsid protein OS=Capybara microvirus Cap3_SP_475 OX=2585467 PE=4 SV=1
MM1 pKa = 7.81LSTLCDD7 pKa = 3.96FNKK10 pKa = 10.03FDD12 pKa = 3.05ISKK15 pKa = 8.32TVRR18 pKa = 11.84IKK20 pKa = 10.55FSNIIITVFEE30 pKa = 4.22SSNFDD35 pKa = 3.45FDD37 pKa = 3.82ITQEE41 pKa = 4.1DD42 pKa = 4.37KK43 pKa = 11.2NLNDD47 pKa = 3.51ISILNDD53 pKa = 3.81SILEE57 pKa = 3.96EE58 pKa = 4.31LNKK61 pKa = 10.65SFTNVKK67 pKa = 10.04LL68 pKa = 3.61

Molecular weight: 7.88 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A4P8W503|A0A4P8W503_9VIRU Uncharacterized protein OS=Capybara microvirus Cap3_SP_475 OX=2585467 PE=4 SV=1
MM1 pKa = 7.49KK2 pKa = 10.4CFAPLRR8 pKa = 11.84LKK10 pKa = 10.88VRR12 pKa = 11.84GATNLSGAPVFVPCGRR28 pKa = 11.84CFACKK33 pKa = 9.83QNNRR37 pKa = 11.84NSWSFRR43 pKa = 11.84LHH45 pKa = 6.49NEE47 pKa = 3.56ASSCLNSFFFTLTYY61 pKa = 9.63NPKK64 pKa = 9.46YY65 pKa = 9.66VPKK68 pKa = 10.44IKK70 pKa = 9.97ICNSIFKK77 pKa = 9.08TVSKK81 pKa = 10.7RR82 pKa = 11.84DD83 pKa = 3.25VQLFIKK89 pKa = 10.46RR90 pKa = 11.84LRR92 pKa = 11.84KK93 pKa = 9.71NSGLKK98 pKa = 7.71FTYY101 pKa = 10.39YY102 pKa = 10.04IISEE106 pKa = 4.19YY107 pKa = 10.82GPRR110 pKa = 11.84TNRR113 pKa = 11.84PHH115 pKa = 4.77YY116 pKa = 10.15HH117 pKa = 6.8GIIFLYY123 pKa = 10.81SKK125 pKa = 10.19IDD127 pKa = 3.39KK128 pKa = 10.86DD129 pKa = 3.68NLQKK133 pKa = 10.83FISSSWFLGFCRR145 pKa = 11.84VDD147 pKa = 3.41SLSLARR153 pKa = 11.84IEE155 pKa = 4.44YY156 pKa = 7.69VTAYY160 pKa = 8.77TFKK163 pKa = 10.39EE164 pKa = 3.98CEE166 pKa = 4.0PRR168 pKa = 11.84FKK170 pKa = 10.63KK171 pKa = 10.54YY172 pKa = 9.95QLPNFRR178 pKa = 11.84LTSRR182 pKa = 11.84RR183 pKa = 11.84PALGSSFLEE192 pKa = 4.84DD193 pKa = 3.66YY194 pKa = 11.7NNFDD198 pKa = 4.77LIKK201 pKa = 10.51AIEE204 pKa = 4.29NGLTNIKK211 pKa = 10.84YY212 pKa = 9.64NDD214 pKa = 3.44KK215 pKa = 10.63FINIPRR221 pKa = 11.84YY222 pKa = 8.9YY223 pKa = 9.86KK224 pKa = 10.84NKK226 pKa = 9.79IAPTSNSYY234 pKa = 11.24EE235 pKa = 4.06DD236 pKa = 4.8LEE238 pKa = 4.78NIYY241 pKa = 8.95NTLSFQNDD249 pKa = 3.25YY250 pKa = 11.02NIKK253 pKa = 10.39KK254 pKa = 9.51FYY256 pKa = 10.3KK257 pKa = 9.55YY258 pKa = 11.29YY259 pKa = 10.38KK260 pKa = 9.61IKK262 pKa = 10.26YY263 pKa = 7.79PNWDD267 pKa = 3.12NKK269 pKa = 10.58QILSYY274 pKa = 10.48IFHH277 pKa = 7.01NSNLTHH283 pKa = 5.91NQLRR287 pKa = 11.84FTIKK291 pKa = 10.44QIFKK295 pKa = 10.29NGKK298 pKa = 7.45VQNLYY303 pKa = 10.72DD304 pKa = 3.43

Molecular weight: 36.15 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

6

0

6

1579

68

626

263.2

30.45

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

4.433 ± 0.858

1.267 ± 0.45

5.13 ± 0.532

4.687 ± 0.462

6.966 ± 0.537

3.737 ± 0.565

1.583 ± 0.29

7.346 ± 0.694

7.6 ± 1.35

8.93 ± 0.232

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.393 ± 0.27

9.88 ± 1.415

4.37 ± 0.756

5.13 ± 1.12

3.293 ± 0.747

8.233 ± 0.583

5.573 ± 0.732

4.053 ± 0.559

0.823 ± 0.163

5.573 ± 0.922
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski