Streptococcus satellite phage Javan356

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; unclassified Siphoviridae

Average proteome isoelectric point is 7.03

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 15 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A4D5ZLM3|A0A4D5ZLM3_9VIRU Uncharacterized protein OS=Streptococcus satellite phage Javan356 OX=2558656 GN=JavanS356_0009 PE=4 SV=1
MM1 pKa = 6.83FTIEE5 pKa = 4.22EE6 pKa = 5.06LINADD11 pKa = 4.55KK12 pKa = 11.19EE13 pKa = 4.48NNTNFADD20 pKa = 3.41ILINYY25 pKa = 9.02ISLNDD30 pKa = 3.75YY31 pKa = 10.3DD32 pKa = 4.95KK33 pKa = 11.34KK34 pKa = 10.82IAFDD38 pKa = 4.15LVQKK42 pKa = 10.76LSEE45 pKa = 3.95RR46 pKa = 11.84DD47 pKa = 3.47KK48 pKa = 11.41EE49 pKa = 4.26KK50 pKa = 10.88EE51 pKa = 3.81

Molecular weight: 6.05 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A4D5ZQT1|A0A4D5ZQT1_9VIRU Uncharacterized protein OS=Streptococcus satellite phage Javan356 OX=2558656 GN=JavanS356_0011 PE=4 SV=1
MM1 pKa = 7.86LITSTQAKK9 pKa = 9.74AIRR12 pKa = 11.84RR13 pKa = 11.84KK14 pKa = 9.64QADD17 pKa = 3.46KK18 pKa = 11.4NLTAKK23 pKa = 10.33RR24 pKa = 11.84ASEE27 pKa = 4.32EE28 pKa = 3.83IGVNPITYY36 pKa = 10.11RR37 pKa = 11.84KK38 pKa = 9.32IRR40 pKa = 11.84DD41 pKa = 3.51GGEE44 pKa = 4.09VKK46 pKa = 10.52PSIYY50 pKa = 9.91QKK52 pKa = 11.14AMQWLAEE59 pKa = 4.48DD60 pKa = 4.07YY61 pKa = 11.23

Molecular weight: 6.98 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

15

0

15

2507

51

388

167.1

19.44

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

4.388 ± 0.352

0.758 ± 0.145

6.382 ± 0.435

7.938 ± 0.806

4.587 ± 0.392

4.507 ± 0.686

1.715 ± 0.295

6.901 ± 0.503

11.767 ± 0.601

9.533 ± 0.47

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.314 ± 0.353

5.824 ± 0.426

1.795 ± 0.229

4.108 ± 0.273

4.348 ± 0.279

6.103 ± 0.354

6.462 ± 0.672

5.305 ± 0.445

0.758 ± 0.109

4.507 ± 0.413
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski