Baekduia soli

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Rubrobacteria; Rubrobacterales; Baekduiaceae; Baekduia

Average proteome isoelectric point is 6.61

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4785 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A5B8TZL5|A0A5B8TZL5_9ACTN Hydantoinase/oxoprolinase family protein OS=Baekduia soli OX=496014 GN=FSW04_00370 PE=4 SV=1
MM1 pKa = 7.16QKK3 pKa = 9.86WICEE7 pKa = 4.32SCGFIYY13 pKa = 10.57DD14 pKa = 4.34PADD17 pKa = 3.82GDD19 pKa = 4.11PDD21 pKa = 4.0GGIPPGTAFADD32 pKa = 4.06IPDD35 pKa = 3.46TWFCPVCGARR45 pKa = 11.84KK46 pKa = 9.16RR47 pKa = 11.84DD48 pKa = 3.65FVAYY52 pKa = 9.92EE53 pKa = 3.93DD54 pKa = 3.72

Molecular weight: 5.95 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A5B8U589|A0A5B8U589_9ACTN Glutamine synthetase OS=Baekduia soli OX=496014 GN=FSW04_11005 PE=3 SV=1
MM1 pKa = 7.58TSSQMPTSTTMPRR14 pKa = 11.84GARR17 pKa = 11.84RR18 pKa = 11.84SRR20 pKa = 11.84RR21 pKa = 11.84RR22 pKa = 11.84RR23 pKa = 11.84RR24 pKa = 11.84SRR26 pKa = 11.84AARR29 pKa = 11.84RR30 pKa = 11.84SPRR33 pKa = 11.84RR34 pKa = 11.84CRR36 pKa = 11.84TAGPSRR42 pKa = 11.84ARR44 pKa = 11.84RR45 pKa = 11.84RR46 pKa = 11.84GRR48 pKa = 11.84RR49 pKa = 11.84PPGPGARR56 pKa = 11.84RR57 pKa = 11.84GRR59 pKa = 11.84GARR62 pKa = 11.84APARR66 pKa = 11.84ARR68 pKa = 11.84ARR70 pKa = 11.84RR71 pKa = 11.84RR72 pKa = 11.84PRR74 pKa = 11.84AVARR78 pKa = 11.84PAPRR82 pKa = 11.84RR83 pKa = 11.84GRR85 pKa = 3.51

Molecular weight: 9.69 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4785

0

4785

1506352

29

2064

314.8

33.53

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

14.912 ± 0.067

0.858 ± 0.01

6.042 ± 0.028

5.461 ± 0.04

2.741 ± 0.021

9.729 ± 0.031

2.362 ± 0.017

3.56 ± 0.024

1.572 ± 0.024

10.303 ± 0.04

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.765 ± 0.015

1.48 ± 0.017

6.043 ± 0.032

2.57 ± 0.019

8.882 ± 0.043

4.515 ± 0.03

5.423 ± 0.034

8.674 ± 0.033

1.337 ± 0.015

1.773 ± 0.015
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski