Anaerocolumna aminovalerica

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Firmicutes; Clostridia; Eubacteriales; Lachnospiraceae; Anaerocolumna

Average proteome isoelectric point is 6.21

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4029 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1I5GSW3|A0A1I5GSW3_9FIRM Lysophospholipase L1 OS=Anaerocolumna aminovalerica OX=1527 GN=SAMN04489757_12227 PE=4 SV=1
MM1 pKa = 7.95DD2 pKa = 5.47PSGTPTPAMPPLYY15 pKa = 9.86PGFLINYY22 pKa = 7.44FAYY25 pKa = 10.56SQDD28 pKa = 3.15GNDD31 pKa = 3.86YY32 pKa = 10.75FDD34 pKa = 5.64SLDD37 pKa = 4.05SDD39 pKa = 3.74TKK41 pKa = 11.16DD42 pKa = 3.4YY43 pKa = 10.62VAKK46 pKa = 10.57HH47 pKa = 5.8VDD49 pKa = 3.89DD50 pKa = 5.08LSSINDD56 pKa = 2.89IKK58 pKa = 11.47ACINEE63 pKa = 4.14LNGDD67 pKa = 3.83KK68 pKa = 11.01

Molecular weight: 7.52 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1I5HWN4|A0A1I5HWN4_9FIRM Uncharacterized protein YigZ family OS=Anaerocolumna aminovalerica OX=1527 GN=SAMN04489757_13524 PE=3 SV=1
MM1 pKa = 7.67KK2 pKa = 8.72MTFQPKK8 pKa = 8.69KK9 pKa = 7.75RR10 pKa = 11.84SRR12 pKa = 11.84SRR14 pKa = 11.84VHH16 pKa = 6.58GFRR19 pKa = 11.84ARR21 pKa = 11.84MSTSNGRR28 pKa = 11.84KK29 pKa = 8.69VLASRR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 10.26GRR39 pKa = 11.84HH40 pKa = 5.5KK41 pKa = 10.9LSAA44 pKa = 3.8

Molecular weight: 5.1 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4029

0

4029

1286805

30

2040

319.4

35.98

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.306 ± 0.041

1.179 ± 0.013

5.443 ± 0.027

7.407 ± 0.041

4.28 ± 0.023

6.682 ± 0.036

1.634 ± 0.014

8.978 ± 0.04

7.746 ± 0.035

9.097 ± 0.034

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.828 ± 0.018

5.477 ± 0.031

3.146 ± 0.022

2.964 ± 0.019

3.625 ± 0.024

6.162 ± 0.029

5.451 ± 0.029

6.451 ± 0.029

0.81 ± 0.01

4.335 ± 0.027
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski