Callitrichine gammaherpesvirus 3 (Marmoset lymphocryptovirus)

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Peploviricota; Herviviricetes; Herpesvirales; Herpesviridae; Gammaherpesvirinae; Lymphocryptovirus

Average proteome isoelectric point is 6.63

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 72 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|Q993I2|Q993I2_9GAMA Shutoff alkaline exonuclease OS=Callitrichine gammaherpesvirus 3 OX=106331 PE=3 SV=1
MM1 pKa = 7.47GSIFSLCRR9 pKa = 11.84RR10 pKa = 11.84RR11 pKa = 11.84VYY13 pKa = 10.03PLKK16 pKa = 10.6SVNGEE21 pKa = 4.16EE22 pKa = 3.94INLYY26 pKa = 10.91DD27 pKa = 4.84DD28 pKa = 5.07FEE30 pKa = 4.87CFSVEE35 pKa = 4.5TPCLIADD42 pKa = 4.4DD43 pKa = 4.38EE44 pKa = 4.63NEE46 pKa = 3.87IEE48 pKa = 4.28ITNEE52 pKa = 4.48LSDD55 pKa = 4.34NDD57 pKa = 3.71NDD59 pKa = 5.17DD60 pKa = 3.89EE61 pKa = 4.52FTALTKK67 pKa = 10.59QKK69 pKa = 10.33IKK71 pKa = 10.66YY72 pKa = 9.8AEE74 pKa = 3.96PP75 pKa = 3.86

Molecular weight: 8.66 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|Q8BEN8|Q8BEN8_9GAMA ORF58 OS=Callitrichine gammaherpesvirus 3 OX=106331 PE=3 SV=1
MM1 pKa = 8.1DD2 pKa = 3.99GRR4 pKa = 11.84RR5 pKa = 11.84PPRR8 pKa = 11.84PNVQSRR14 pKa = 11.84LEE16 pKa = 3.85ADD18 pKa = 4.36FPNHH22 pKa = 6.16HH23 pKa = 6.83LQTKK27 pKa = 9.85FMEE30 pKa = 4.5LVQGNLSDD38 pKa = 3.5KK39 pKa = 10.39EE40 pKa = 4.03YY41 pKa = 11.21RR42 pKa = 11.84EE43 pKa = 4.14AQAGYY48 pKa = 8.55LTFLIAEE55 pKa = 4.41HH56 pKa = 6.89CYY58 pKa = 9.73EE59 pKa = 4.25NYY61 pKa = 7.85VQRR64 pKa = 11.84MHH66 pKa = 6.69GVLRR70 pKa = 11.84RR71 pKa = 11.84QVAQARR77 pKa = 11.84RR78 pKa = 11.84GAASTSSHH86 pKa = 6.16IGSIASAATGTASSVQPSASSVPATTPSPARR117 pKa = 11.84TIPPPVSQPPITLSVSQASGTDD139 pKa = 3.17GGAGDD144 pKa = 3.61TGSRR148 pKa = 11.84PGRR151 pKa = 11.84RR152 pKa = 11.84KK153 pKa = 10.02

Molecular weight: 16.31 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

72

0

72

34923

75

2819

485.0

54.14

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.849 ± 0.202

2.357 ± 0.186

4.871 ± 0.153

5.495 ± 0.181

4.255 ± 0.168

5.836 ± 0.24

2.841 ± 0.116

5.481 ± 0.194

4.143 ± 0.156

10.111 ± 0.229

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.254 ± 0.116

4.204 ± 0.145

6.136 ± 0.247

3.559 ± 0.157

5.839 ± 0.194

7.969 ± 0.18

6.935 ± 0.178

6.586 ± 0.213

1.203 ± 0.079

3.078 ± 0.136
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski