Anatid alphaherpesvirus 1

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Peploviricota; Herviviricetes; Herpesvirales; Herpesviridae; Alphaherpesvirinae; Mardivirus

Average proteome isoelectric point is 6.47

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 74 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|E6Y398|E6Y398_9ALPH Tegument protein UL47 OS=Anatid alphaherpesvirus 1 OX=104388 GN=UL47 PE=3 SV=1
MM1 pKa = 7.21QSHH4 pKa = 7.64PATFITYY11 pKa = 8.53TLGGTGASHH20 pKa = 6.87TWTVPEE26 pKa = 4.21YY27 pKa = 9.7EE28 pKa = 4.65QVICSCDD35 pKa = 3.11GGSRR39 pKa = 11.84SVLVGNKK46 pKa = 7.29TRR48 pKa = 11.84CDD50 pKa = 3.53KK51 pKa = 11.12LPPCNVIIQRR61 pKa = 11.84GPLGTLFVVDD71 pKa = 4.0IGYY74 pKa = 10.38AIYY77 pKa = 10.39SYY79 pKa = 9.58MLRR82 pKa = 11.84CDD84 pKa = 4.65LKK86 pKa = 10.38QQVGTLSASPGSLYY100 pKa = 10.68VVPFTSCTVVGVDD113 pKa = 3.26SYY115 pKa = 11.56IRR117 pKa = 11.84SDD119 pKa = 3.19SSGVLTIAWSHH130 pKa = 4.84NTVHH134 pKa = 5.87ITITVYY140 pKa = 10.77GLSEE144 pKa = 3.94EE145 pKa = 4.37SQRR148 pKa = 11.84MASVSAISTVGQDD161 pKa = 3.51YY162 pKa = 11.31EE163 pKa = 4.19NLQDD167 pKa = 4.32IANQEE172 pKa = 3.91QSEE175 pKa = 4.23EE176 pKa = 4.24DD177 pKa = 3.86LLSAAIKK184 pKa = 9.23EE185 pKa = 4.27ANIGVDD191 pKa = 3.76YY192 pKa = 10.98ISDD195 pKa = 3.98SEE197 pKa = 4.48SSSRR201 pKa = 11.84TVMDD205 pKa = 5.24DD206 pKa = 3.94LLTSIQDD213 pKa = 3.58EE214 pKa = 4.48CLEE217 pKa = 4.32TADD220 pKa = 4.59CFCNGTSQEE229 pKa = 4.23PIAVNGIDD237 pKa = 3.07II238 pKa = 4.36

Molecular weight: 25.62 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|Q156E1|Q156E1_9ALPH Thymidine kinase OS=Anatid alphaherpesvirus 1 OX=104388 GN=TK PE=3 SV=1
MM1 pKa = 7.01QLVHH5 pKa = 7.14HH6 pKa = 7.25IYY8 pKa = 8.91STNISIDD15 pKa = 3.59YY16 pKa = 10.47IFIICHH22 pKa = 4.99VDD24 pKa = 3.05GLVRR28 pKa = 11.84ARR30 pKa = 11.84PRR32 pKa = 11.84PGEE35 pKa = 4.02ALDD38 pKa = 4.27PLCHH42 pKa = 6.65FPGHH46 pKa = 6.1RR47 pKa = 11.84KK48 pKa = 9.65KK49 pKa = 10.98GAGLFWRR56 pKa = 11.84GAKK59 pKa = 9.93RR60 pKa = 11.84GVAWQHH66 pKa = 6.01ANSTHH71 pKa = 5.7WAGLGLLPTPPTISPSHH88 pKa = 5.84GRR90 pKa = 11.84GLDD93 pKa = 3.29HH94 pKa = 6.69CQPRR98 pKa = 11.84PWEE101 pKa = 4.27GRR103 pKa = 11.84SRR105 pKa = 11.84PWEE108 pKa = 3.95EE109 pKa = 3.71LGLAGFQRR117 pKa = 11.84FYY119 pKa = 11.09GIRR122 pKa = 11.84VRR124 pKa = 11.84VGRR127 pKa = 11.84VPKK130 pKa = 10.12VLRR133 pKa = 11.84YY134 pKa = 9.42

Molecular weight: 15.22 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

74

0

74

40471

87

3587

546.9

60.81

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.149 ± 0.239

2.229 ± 0.102

6.002 ± 0.153

5.379 ± 0.148

3.738 ± 0.201

6.239 ± 0.178

2.288 ± 0.074

5.849 ± 0.174

3.929 ± 0.168

8.796 ± 0.203

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.636 ± 0.087

4.171 ± 0.09

5.055 ± 0.226

3.059 ± 0.184

6.773 ± 0.184

8.142 ± 0.274

6.832 ± 0.157

6.227 ± 0.12

1.09 ± 0.066

3.417 ± 0.118
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski