Lapidilactobacillus dextrinicus DSM 20335
Average proteome isoelectric point is 6.45
Get precalculated fractions of proteins
Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
All
Note: above files contain also dissociation constants (pKa)
Virtual 2D-PAGE plot for 1691 proteins (isoelectric point calculated using IPC2_protein)
Get csv file with sequences according to given criteria:
* You can choose from 21 different methods for calculating isoelectric point
Summary statistics related to proteome-wise predictions
Protein with the lowest isoelectric point:
>tr|A0A0R2BKH3|A0A0R2BKH3_9LACO Response regulator OS=Lapidilactobacillus dextrinicus DSM 20335 OX=1423738 GN=FC84_GL000952 PE=4 SV=1
MM1 pKa = 7.08 ATAKK5 pKa = 9.85 IVYY8 pKa = 10.55 ASMTGNNEE16 pKa = 3.64 EE17 pKa = 4.03 IAQIMEE23 pKa = 4.13 EE24 pKa = 4.01 QFEE27 pKa = 4.35 NLGVEE32 pKa = 4.09 VDD34 pKa = 3.61 TTEE37 pKa = 4.93 ASQADD42 pKa = 3.52 ASDD45 pKa = 4.22 FEE47 pKa = 5.36 DD48 pKa = 3.9 VDD50 pKa = 3.54 ICVVATYY57 pKa = 10.46 TDD59 pKa = 4.07 GEE61 pKa = 4.56 GEE63 pKa = 4.44 IPDD66 pKa = 4.11 EE67 pKa = 4.46 AQDD70 pKa = 5.03 FYY72 pKa = 11.92 DD73 pKa = 5.29 DD74 pKa = 4.31 LQEE77 pKa = 4.11 EE78 pKa = 4.71 DD79 pKa = 4.17 LTGKK83 pKa = 10.2 IYY85 pKa = 8.06 GTCGSGDD92 pKa = 3.65 RR93 pKa = 11.84 FYY95 pKa = 11.71 GDD97 pKa = 3.93 HH98 pKa = 6.82 FCATVDD104 pKa = 4.6 DD105 pKa = 4.71 FDD107 pKa = 3.9 HH108 pKa = 6.88 TFAQTGATKK117 pKa = 10.32 GAEE120 pKa = 4.12 SVKK123 pKa = 10.12 IDD125 pKa = 3.96 LAAEE129 pKa = 4.25 AEE131 pKa = 4.55 DD132 pKa = 4.84 IEE134 pKa = 4.88 NLDD137 pKa = 3.71 TFVKK141 pKa = 10.48 EE142 pKa = 4.19 LVAKK146 pKa = 10.75 ANANGG151 pKa = 3.38
Molecular weight: 16.34 kDa
Isoelectric point according different methods:
IPC2.protein.svr19 3.783
IPC2_protein 3.617
IPC_protein 3.605
Toseland 3.401
ProMoST 3.77
Dawson 3.592
Bjellqvist 3.757
Wikipedia 3.516
Rodwell 3.439
Grimsley 3.312
Solomon 3.579
Lehninger 3.541
Nozaki 3.719
DTASelect 3.91
Thurlkill 3.452
EMBOSS 3.528
Sillero 3.732
Patrickios 1.812
IPC_peptide 3.579
IPC2_peptide 3.706
IPC2.peptide.svr19 3.699
Protein with the highest isoelectric point:
>tr|A0A0R2BUP7|A0A0R2BUP7_9LACO Transcriptional regulator OS=Lapidilactobacillus dextrinicus DSM 20335 OX=1423738 GN=FC84_GL000698 PE=4 SV=1
MM1 pKa = 7.39 IAFFGFWGGVARR13 pKa = 11.84 LYY15 pKa = 8.79 GTHH18 pKa = 7.33 LLASPWNTLTINLLGAFLLPMWTGFLGPRR47 pKa = 11.84 LAKK50 pKa = 9.81 NRR52 pKa = 11.84 HH53 pKa = 4.42 WLVLGVGTGFFGAFTTFSSFCLDD76 pKa = 3.63 FVKK79 pKa = 10.89 LIIANQLTSALAYY92 pKa = 10.4 LGISIIGGVLVAWLGVTVAQRR113 pKa = 11.84 LTMKK117 pKa = 10.35 EE118 pKa = 3.65 MRR120 pKa = 11.84 FF121 pKa = 3.55
Molecular weight: 13.29 kDa
Isoelectric point according different methods:
IPC2.protein.svr19 9.332
IPC2_protein 9.867
IPC_protein 10.657
Toseland 10.701
ProMoST 10.409
Dawson 10.818
Bjellqvist 10.526
Wikipedia 11.023
Rodwell 11.082
Grimsley 10.877
Solomon 10.921
Lehninger 10.891
Nozaki 10.687
DTASelect 10.526
Thurlkill 10.701
EMBOSS 11.096
Sillero 10.745
Patrickios 10.906
IPC_peptide 10.921
IPC2_peptide 9.604
IPC2.peptide.svr19 8.331
Peptides (in silico digests for buttom-up proteomics)
Below you can find
in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.
Try ESI
ChTry ESI
ArgC ESI
LysN ESI
TryLysC ESI
Try MALDI
ChTry MALDI
ArgC MALDI
LysN MALDI
TryLysC MALDI
Try LTQ
ChTry LTQ
ArgC LTQ
LysN LTQ
TryLysC LTQ
Try MSlow
ChTry MSlow
ArgC MSlow
LysN MSlow
TryLysC MSlow
Try MShigh
ChTry MShigh
ArgC MShigh
LysN MShigh
TryLysC MShigh
General Statistics
Number of major isoforms
Number of additional isoforms
Number of all proteins
Number of amino acids
Min. Seq. Length
Max. Seq. Length
Avg. Seq. Length
Avg. Mol. Weight
1691
0
1691
520490
50
1447
307.8
34.36
Amino acid frequency
Ala
Cys
Asp
Glu
Phe
Gly
His
Ile
Lys
Leu
8.255 ± 0.069
0.451 ± 0.014
5.778 ± 0.053
5.565 ± 0.064
4.203 ± 0.048
6.423 ± 0.049
2.15 ± 0.026
7.254 ± 0.054
6.0 ± 0.052
10.142 ± 0.072
Met
Asn
Gln
Pro
Arg
Ser
Thr
Val
Trp
Tyr
2.509 ± 0.028
4.791 ± 0.045
3.658 ± 0.03
5.36 ± 0.063
3.995 ± 0.042
5.653 ± 0.07
6.366 ± 0.047
6.932 ± 0.048
0.995 ± 0.023
3.52 ± 0.039
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level
Most of the basic statistics you can see at this page can be downloaded from this CSV file
For dipeptide frequency statistics click here