Candidatus Similichlamydia laticola

Taxonomy: cellular organisms; Bacteria; PVC group; Chlamydiae; Chlamydiia; Parachlamydiales; Candidatus Parilichlamydiaceae; Candidatus Similichlamydia

Average proteome isoelectric point is 7.0

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 750 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A369KIX5|A0A369KIX5_9BACT GTPase Obg OS=Candidatus Similichlamydia laticola OX=2170265 GN=obg PE=3 SV=1
MM1 pKa = 7.97DD2 pKa = 5.98NIFLILNTSLYY13 pKa = 11.12SSVSWNFLLPPCGLTDD29 pKa = 3.81FFRR32 pKa = 11.84DD33 pKa = 3.01SLGYY37 pKa = 10.66VNEE40 pKa = 4.16

Molecular weight: 4.6 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A369KAY7|A0A369KAY7_9BACT Uncharacterized protein OS=Candidatus Similichlamydia laticola OX=2170265 GN=HAT2_00151 PE=4 SV=1
MM1 pKa = 7.49VKK3 pKa = 9.13RR4 pKa = 11.84TYY6 pKa = 10.29QPSKK10 pKa = 10.04IKK12 pKa = 10.24RR13 pKa = 11.84QRR15 pKa = 11.84TFGFRR20 pKa = 11.84KK21 pKa = 9.95RR22 pKa = 11.84MSTRR26 pKa = 11.84AGRR29 pKa = 11.84RR30 pKa = 11.84ILARR34 pKa = 11.84RR35 pKa = 11.84RR36 pKa = 11.84AAGRR40 pKa = 11.84VRR42 pKa = 11.84LSAA45 pKa = 4.12

Molecular weight: 5.38 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

750

0

750

232731

37

1812

310.3

35.0

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.331 ± 0.073

2.0 ± 0.037

4.245 ± 0.052

7.003 ± 0.089

5.574 ± 0.083

6.232 ± 0.08

2.415 ± 0.045

5.667 ± 0.062

5.435 ± 0.083

12.553 ± 0.089

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.038 ± 0.033

2.83 ± 0.053

4.436 ± 0.056

4.218 ± 0.063

5.972 ± 0.073

8.416 ± 0.083

4.654 ± 0.112

6.242 ± 0.079

1.369 ± 0.035

2.369 ± 0.039
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski