Candidatus Bipolaricaulis anaerobius
Average proteome isoelectric point is 6.62
Get precalculated fractions of proteins
Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
All
Note: above files contain also dissociation constants (pKa)
Virtual 2D-PAGE plot for 1319 proteins (isoelectric point calculated using IPC2_protein)
Get csv file with sequences according to given criteria:
* You can choose from 21 different methods for calculating isoelectric point
Summary statistics related to proteome-wise predictions
Protein with the lowest isoelectric point:
>tr|A0A2X3L1W7|A0A2X3L1W7_9BACT 4-alpha-glucanotransferase OS=Candidatus Bipolaricaulis anaerobius OX=2026885 GN=malQ PE=3 SV=1
MM1 pKa = 7.33 NWFSCGNRR9 pKa = 11.84 DD10 pKa = 3.49 ARR12 pKa = 11.84 GHH14 pKa = 6.08 AGHH17 pKa = 7.35 RR18 pKa = 11.84 SRR20 pKa = 11.84 RR21 pKa = 11.84 VLIPVLGLVFALGLIGFGATNTTTTLTSDD50 pKa = 3.74 VNPSVHH56 pKa = 5.75 GQPVTFTATVNPVPDD71 pKa = 4.17 GGTVIFKK78 pKa = 11.0 NEE80 pKa = 3.76 TSVLGSVTVDD90 pKa = 2.89 TGTGKK95 pKa = 10.75 ANFSTNSLSVGSHH108 pKa = 6.85 SITAEE113 pKa = 3.85 YY114 pKa = 10.68 SGTTDD119 pKa = 3.61 YY120 pKa = 11.49 NPSTSSPLDD129 pKa = 3.31 QKK131 pKa = 11.07 VDD133 pKa = 3.47 KK134 pKa = 11.06 ASTTVSVGSSTNPSVTGQSVTFTATVSAVSPGSGTPTGTVDD175 pKa = 5.09 FYY177 pKa = 11.92 ASGNLIAADD186 pKa = 4.26 CPLSGGTATCSRR198 pKa = 11.84 SFAHH202 pKa = 6.67 IEE204 pKa = 4.07 SPVAVTAHH212 pKa = 5.87 YY213 pKa = 10.96 SGDD216 pKa = 3.78 TNFNPSDD223 pKa = 3.66 NVLNPLTQTVDD234 pKa = 3.27 KK235 pKa = 11.07 ASTTVTFIPSGSSWVGDD252 pKa = 3.75 SYY254 pKa = 11.21 TVSGEE259 pKa = 4.17 VTVTSPGSGVPTGTVTVRR277 pKa = 11.84 DD278 pKa = 4.13 DD279 pKa = 3.5 TGEE282 pKa = 3.89 TCAANLVEE290 pKa = 4.74 GAWSCFLSSSGAAGTRR306 pKa = 11.84 TLTAVYY312 pKa = 10.05 EE313 pKa = 4.3 GDD315 pKa = 3.33 ANYY318 pKa = 10.72 AGSSGSTTHH327 pKa = 6.22 QVTTVATTLALTDD340 pKa = 3.9 EE341 pKa = 5.19 PDD343 pKa = 3.46 PSVVGGAVTLTATATAEE360 pKa = 4.25 TGGGSPTGTVSFSIGTTPLGSAEE383 pKa = 4.23 LVSSGTNKK391 pKa = 10.12 SEE393 pKa = 3.93 AVLVTTQIPFGTHH406 pKa = 6.97 TITATYY412 pKa = 9.61 PGDD415 pKa = 3.34 GRR417 pKa = 11.84 FAGSTATAEE426 pKa = 4.12 HH427 pKa = 6.26 TASKK431 pKa = 10.87 RR432 pKa = 11.84 EE433 pKa = 3.98 TTTLVMGSDD442 pKa = 3.5 TALVVGDD449 pKa = 3.95 TVTVTVRR456 pKa = 11.84 VVDD459 pKa = 4.15 TSPGASSMPTGTVSVSVSPTDD480 pKa = 3.28 QGTPTSWSHH489 pKa = 6.44 ALVAADD495 pKa = 3.41 AGEE498 pKa = 4.19 FTFTYY503 pKa = 9.72 TPTSGEE509 pKa = 4.36 TTPHH513 pKa = 6.53 TFTATYY519 pKa = 10.39 AGDD522 pKa = 3.87 STHH525 pKa = 6.6 SGSSGSFAQAIIKK538 pKa = 9.96 RR539 pKa = 11.84 AADD542 pKa = 3.26 IQLVLDD548 pKa = 3.72 PTTAYY553 pKa = 9.74 ILQNVACQVHH563 pKa = 6.54 VEE565 pKa = 4.35 DD566 pKa = 4.81 DD567 pKa = 3.82 TAAGTPITPSGDD579 pKa = 3.21 VTFDD583 pKa = 3.55 DD584 pKa = 4.68 GGKK587 pKa = 9.89 NGAFTVSGTPGTTWPLDD604 pKa = 3.33 GSGNLSVIYY613 pKa = 10.06 TPGAFDD619 pKa = 5.11 AGTTTITATYY629 pKa = 9.17 NGSAVHH635 pKa = 6.39 IGKK638 pKa = 8.26 STTQLLTVLLRR649 pKa = 11.84 PTEE652 pKa = 4.13 VTVNGCTNTILVNQEE667 pKa = 3.26 CSYY670 pKa = 10.51 TVTVEE675 pKa = 4.09 EE676 pKa = 4.64 ADD678 pKa = 4.74 GIPGTATAPFGTLSYY693 pKa = 10.89 SSYY696 pKa = 10.49 LGSDD700 pKa = 3.31 ATQVPNSGAAPSGTFTYY717 pKa = 9.98 TCLGLDD723 pKa = 3.61 GHH725 pKa = 7.15 AGIDD729 pKa = 3.57 TIYY732 pKa = 11.37 AHH734 pKa = 5.8 YY735 pKa = 9.0 TPNDD739 pKa = 4.63 GIHH742 pKa = 6.21 AASGGGFGQAIQRR755 pKa = 11.84 RR756 pKa = 11.84 PTITTVTGSGTPAGVTYY773 pKa = 9.08 TATVQEE779 pKa = 4.5 DD780 pKa = 3.68 SGNAGTDD787 pKa = 3.32 TILQGNIHH795 pKa = 7.08 LLQPNEE801 pKa = 4.12 YY802 pKa = 8.87 PCTGLSGATLTCTGNFNTTSPLVNVTVQFGPTDD835 pKa = 3.69 RR836 pKa = 11.84 THH838 pKa = 6.87 LGSTGSVNIEE848 pKa = 4.48 RR849 pKa = 11.84 YY850 pKa = 9.83 DD851 pKa = 3.82 QFPDD855 pKa = 3.69 DD856 pKa = 5.37 LGDD859 pKa = 3.88 GSDD862 pKa = 4.92 GSEE865 pKa = 4.36 CDD867 pKa = 4.14 DD868 pKa = 4.02 GCGSGGKK875 pKa = 9.21 NVAQMIFDD883 pKa = 4.72 LNASEE888 pKa = 4.76 VALQAVKK895 pKa = 10.81 LGLDD899 pKa = 3.35 TTALVLDD906 pKa = 4.77 VIPDD910 pKa = 3.66 GVITGGVVVQTGVTIPYY927 pKa = 10.03 SDD929 pKa = 3.17 IAKK932 pKa = 10.24 AVVAGAGILLDD943 pKa = 3.61 IAIMSMDD950 pKa = 4.15 TDD952 pKa = 4.66 LDD954 pKa = 4.38 DD955 pKa = 6.82 DD956 pKa = 4.49 GLPDD960 pKa = 3.61 VLEE963 pKa = 4.47 EE964 pKa = 4.21 NVTDD968 pKa = 3.55 TDD970 pKa = 3.71 YY971 pKa = 11.81 DD972 pKa = 3.28 KK973 pKa = 11.13 WDD975 pKa = 3.61 TDD977 pKa = 3.73 GDD979 pKa = 4.32 GMGDD983 pKa = 3.13 WDD985 pKa = 4.33 EE986 pKa = 5.13 LEE988 pKa = 4.38 EE989 pKa = 4.65 ASGYY993 pKa = 10.29 YY994 pKa = 10.17 GGSRR998 pKa = 11.84 RR999 pKa = 11.84 PDD1001 pKa = 3.76 PNDD1004 pKa = 3.39 SDD1006 pKa = 5.17 SDD1008 pKa = 4.09 DD1009 pKa = 5.32 DD1010 pKa = 5.27 GIPDD1014 pKa = 4.3 GDD1016 pKa = 4.06 EE1017 pKa = 3.7 QSLTHH1022 pKa = 6.43 TNFCVADD1029 pKa = 4.0 TDD1031 pKa = 4.2 CDD1033 pKa = 3.93 TVIDD1037 pKa = 4.53 GGQGLAAVGEE1047 pKa = 4.27 AEE1049 pKa = 4.02 TWGFADD1055 pKa = 4.68 IRR1057 pKa = 11.84 DD1058 pKa = 3.91 HH1059 pKa = 7.43 ADD1061 pKa = 3.12 PLMEE1065 pKa = 4.4 EE1066 pKa = 4.2 TDD1068 pKa = 3.87 GDD1070 pKa = 4.12 GLRR1073 pKa = 11.84 DD1074 pKa = 3.88 DD1075 pKa = 4.65 VEE1077 pKa = 4.3 IAAGCPFVNDD1087 pKa = 5.04 DD1088 pKa = 5.34 DD1089 pKa = 6.23 SDD1091 pKa = 5.11 DD1092 pKa = 5.94 DD1093 pKa = 4.14 GLQDD1097 pKa = 5.67 GFEE1100 pKa = 4.29 SWDD1103 pKa = 3.59 GNGTCVTGDD1112 pKa = 3.1 IGDD1115 pKa = 4.61 SLTQSSLTGEE1125 pKa = 4.31 TDD1127 pKa = 3.45 FCDD1130 pKa = 4.4 PDD1132 pKa = 3.61 TDD1134 pKa = 4.88 GDD1136 pKa = 4.12 GLTDD1140 pKa = 3.82 GEE1142 pKa = 4.52 EE1143 pKa = 4.1 VALLGGLPVTSSGFKK1158 pKa = 9.49 PVAPRR1163 pKa = 11.84 GVSTVFGQDD1172 pKa = 2.97 GSALTATIPALDD1184 pKa = 5.15 DD1185 pKa = 5.57 DD1186 pKa = 4.98 SDD1188 pKa = 4.29 NDD1190 pKa = 3.94 GLSDD1194 pKa = 4.0 CEE1196 pKa = 4.2 EE1197 pKa = 4.08 VSITHH1202 pKa = 6.55 TNPLDD1207 pKa = 3.52 QDD1209 pKa = 3.69 SDD1211 pKa = 3.75 NDD1213 pKa = 4.16 TLSDD1217 pKa = 3.96 ANEE1220 pKa = 4.54 LIAVVGSSWPNRR1232 pKa = 11.84 SFIQVSDD1239 pKa = 4.11 PLDD1242 pKa = 4.38 PDD1244 pKa = 3.84 SDD1246 pKa = 4.75 DD1247 pKa = 5.96 DD1248 pKa = 4.16 GLPDD1252 pKa = 3.38 QVEE1255 pKa = 4.46 YY1256 pKa = 10.24 PGSGLGMLRR1265 pKa = 11.84 TSGGVPDD1272 pKa = 4.36 NVCSYY1277 pKa = 11.37 VGDD1280 pKa = 4.92 DD1281 pKa = 5.43 DD1282 pKa = 6.56 SDD1284 pKa = 5.06 DD1285 pKa = 5.64 DD1286 pKa = 4.31 GLQDD1290 pKa = 4.07 GHH1292 pKa = 6.88 EE1293 pKa = 4.92 DD1294 pKa = 3.85 LDD1296 pKa = 4.58 KK1297 pKa = 11.44 DD1298 pKa = 3.95 GQFDD1302 pKa = 4.39 LGTIGTTQTIGTGEE1316 pKa = 4.26 TNLCNPDD1323 pKa = 3.34 TDD1325 pKa = 5.33 GDD1327 pKa = 4.16 GLDD1330 pKa = 4.72 DD1331 pKa = 5.57 GQEE1334 pKa = 3.87 EE1335 pKa = 4.47 WQLGAGSVAVTSQDD1349 pKa = 3.16 SATIAHH1355 pKa = 6.42 TVPALDD1361 pKa = 4.54 MDD1363 pKa = 4.66 SDD1365 pKa = 5.04 DD1366 pKa = 5.89 DD1367 pKa = 4.14 GLSDD1371 pKa = 3.87 GEE1373 pKa = 4.51 EE1374 pKa = 4.19 VNVTHH1379 pKa = 7.23 TDD1381 pKa = 3.5 PLDD1384 pKa = 3.38 WDD1386 pKa = 4.03 TDD1388 pKa = 3.46 NDD1390 pKa = 4.26 TLSDD1394 pKa = 4.09 LNEE1397 pKa = 4.09 LLVTGGTWPQRR1408 pKa = 11.84 TFSQVSDD1415 pKa = 4.19 PLDD1418 pKa = 4.63 PDD1420 pKa = 3.61 TDD1422 pKa = 4.28 DD1423 pKa = 5.79 DD1424 pKa = 4.37 GLIDD1428 pKa = 3.74 SVEE1431 pKa = 4.07 YY1432 pKa = 11.02 NGTGSDD1438 pKa = 3.55 RR1439 pKa = 11.84 FLHH1442 pKa = 6.62 LSTDD1446 pKa = 3.56 GVDD1449 pKa = 5.49 DD1450 pKa = 4.34 LVCPYY1455 pKa = 11.14 VNDD1458 pKa = 5.39 DD1459 pKa = 5.01 DD1460 pKa = 6.51 SDD1462 pKa = 4.98 DD1463 pKa = 6.16 DD1464 pKa = 4.13 GLQDD1468 pKa = 3.69 GGEE1471 pKa = 4.28 DD1472 pKa = 3.71 ANHH1475 pKa = 7.03 DD1476 pKa = 3.62 GMLGVGGSGISIGDD1490 pKa = 3.47 WGSQATKK1497 pKa = 10.63 SVDD1500 pKa = 3.11 YY1501 pKa = 10.37 WEE1503 pKa = 5.8 CNLCNPDD1510 pKa = 3.32 TDD1512 pKa = 4.77 GDD1514 pKa = 4.09 GLLDD1518 pKa = 3.96 GEE1520 pKa = 4.69 EE1521 pKa = 4.17 VALLGGGPILGRR1533 pKa = 11.84 PRR1535 pKa = 11.84 PIPGFNTVIPEE1546 pKa = 4.12 AVSTVLPLGTGPAGSPPGTRR1566 pKa = 11.84 NSQLGPYY1573 pKa = 8.7 TFVPAAGASMIATIPALDD1591 pKa = 4.09 NDD1593 pKa = 4.24 SDD1595 pKa = 4.36 NDD1597 pKa = 3.87 GLSDD1601 pKa = 3.85 YY1602 pKa = 11.2 EE1603 pKa = 4.25 EE1604 pKa = 4.4 VNITGTDD1611 pKa = 3.7 PLDD1614 pKa = 3.52 QDD1616 pKa = 4.02 SDD1618 pKa = 3.77 NDD1620 pKa = 3.81 TLMDD1624 pKa = 4.3 SDD1626 pKa = 4.47 EE1627 pKa = 5.3 LIAIAGTWPQRR1638 pKa = 11.84 TFDD1641 pKa = 3.89 QEE1643 pKa = 4.84 SNPLDD1648 pKa = 3.7 INTDD1652 pKa = 3.63 DD1653 pKa = 4.86 DD1654 pKa = 4.67 HH1655 pKa = 8.76 LFDD1658 pKa = 4.37 PQEE1661 pKa = 3.99 FSGSGLSTLAGALGGTRR1678 pKa = 11.84 DD1679 pKa = 3.75 MQCPFVNDD1687 pKa = 4.69 DD1688 pKa = 4.71 DD1689 pKa = 6.24 SDD1691 pKa = 4.82 DD1692 pKa = 6.07 DD1693 pKa = 5.15 GIQDD1697 pKa = 3.43 GAVVVRR1703 pKa = 11.84 TFVAVGVTYY1712 pKa = 10.65 SWTHH1716 pKa = 5.95 YY1717 pKa = 10.94 EE1718 pKa = 4.28 DD1719 pKa = 4.15 FADD1722 pKa = 3.69 VTGATDD1728 pKa = 3.97 AAPGTVRR1735 pKa = 11.84 TVVTPAGGEE1744 pKa = 4.09 QNDD1747 pKa = 3.53 DD1748 pKa = 4.52 SIWNVCDD1755 pKa = 4.13 PDD1757 pKa = 4.13 SDD1759 pKa = 4.65 GDD1761 pKa = 3.94 GLLDD1765 pKa = 3.9 GEE1767 pKa = 4.62 EE1768 pKa = 4.28 VAIGTDD1774 pKa = 3.28 PGDD1777 pKa = 3.48 WDD1779 pKa = 3.88 TDD1781 pKa = 3.64 DD1782 pKa = 5.72 DD1783 pKa = 5.45 GRR1785 pKa = 11.84 NDD1787 pKa = 2.77 WHH1789 pKa = 6.45 EE1790 pKa = 4.02 QTGGGPIPTDD1800 pKa = 3.6 PFDD1803 pKa = 5.9 PDD1805 pKa = 3.46 TDD1807 pKa = 4.32 DD1808 pKa = 6.71 DD1809 pKa = 4.54 GLLDD1813 pKa = 3.62 SAEE1816 pKa = 4.27 VFGSNPTNPANCDD1829 pKa = 2.79 TDD1831 pKa = 5.29 ADD1833 pKa = 4.28 GLCDD1837 pKa = 3.6 GGARR1841 pKa = 11.84 TPYY1844 pKa = 7.58 MTSGHH1849 pKa = 6.53 PSVVVSPRR1857 pKa = 11.84 CRR1859 pKa = 11.84 TGIGGHH1865 pKa = 6.4 PNPLGIGEE1873 pKa = 5.11 DD1874 pKa = 3.89 EE1875 pKa = 5.32 DD1876 pKa = 6.36 GDD1878 pKa = 4.42 GAWDD1882 pKa = 4.35 SGEE1885 pKa = 4.09 TDD1887 pKa = 4.11 PNNPDD1892 pKa = 3.17 TDD1894 pKa = 3.64 GDD1896 pKa = 4.09 AVGDD1900 pKa = 3.78 GFEE1903 pKa = 4.15 RR1904 pKa = 11.84 LSFSVSRR1911 pKa = 11.84 QSLIPATDD1919 pKa = 3.57 LFGRR1923 pKa = 11.84 PITVVYY1929 pKa = 10.29 PEE1931 pKa = 4.48 ANNVKK1936 pKa = 9.29 PACGCMNPLTSDD1948 pKa = 3.27 SDD1950 pKa = 3.76 EE1951 pKa = 5.37 DD1952 pKa = 3.82 GLLDD1956 pKa = 4.53 GEE1958 pKa = 4.68 EE1959 pKa = 4.45 DD1960 pKa = 3.98 LNHH1963 pKa = 7.23 DD1964 pKa = 3.75 GHH1966 pKa = 7.56 FDD1968 pKa = 3.95 FLPSDD1973 pKa = 4.29 FDD1975 pKa = 4.29 YY1976 pKa = 10.95 GHH1978 pKa = 7.32 HH1979 pKa = 6.47 GPIPGPAYY1987 pKa = 10.19 GSPLEE1992 pKa = 4.56 TNPCDD1997 pKa = 4.41 PDD1999 pKa = 3.69 TDD2001 pKa = 4.28 HH2002 pKa = 7.99 DD2003 pKa = 4.35 GLTDD2007 pKa = 3.79 LEE2009 pKa = 4.37 EE2010 pKa = 5.08 LRR2012 pKa = 11.84 GQANPPSFFPFNPTDD2027 pKa = 4.2 PLDD2030 pKa = 4.34 HH2031 pKa = 7.29 DD2032 pKa = 4.7 TDD2034 pKa = 4.01 NDD2036 pKa = 4.2 WIYY2039 pKa = 11.02 DD2040 pKa = 3.75 GPEE2043 pKa = 3.83 VRR2045 pKa = 11.84 WVCTEE2050 pKa = 3.95 LLFVSLDD2057 pKa = 3.41 NDD2059 pKa = 3.44 GDD2061 pKa = 4.05 TFIDD2065 pKa = 3.96 EE2066 pKa = 4.77 DD2067 pKa = 4.36 PVDD2070 pKa = 4.1 EE2071 pKa = 4.83 VDD2073 pKa = 3.94 NDD2075 pKa = 3.74 GDD2077 pKa = 4.14 GLIDD2081 pKa = 3.95 EE2082 pKa = 5.76 DD2083 pKa = 5.59 DD2084 pKa = 3.34 VDD2086 pKa = 4.59 FYY2088 pKa = 12.1 VRR2090 pKa = 11.84 FVPVLDD2096 pKa = 3.58 PTNRR2100 pKa = 11.84 DD2101 pKa = 3.02 SDD2103 pKa = 3.81 SDD2105 pKa = 4.06 GFIDD2109 pKa = 6.2 GLDD2112 pKa = 3.63 EE2113 pKa = 5.4 DD2114 pKa = 4.64 PCNTQLIPIARR2125 pKa = 11.84 PVVQTPVDD2133 pKa = 3.45 TDD2135 pKa = 3.49 GDD2137 pKa = 4.02 GFADD2141 pKa = 4.45 DD2142 pKa = 5.62 DD2143 pKa = 4.61 EE2144 pKa = 5.42 IAAGTHH2150 pKa = 6.42 PNDD2153 pKa = 3.72 PTSFPCAFGSDD2164 pKa = 3.72 LDD2166 pKa = 4.44 LDD2168 pKa = 4.62 GVCDD2172 pKa = 4.08 DD2173 pKa = 5.15 RR2174 pKa = 11.84 LWLTDD2179 pKa = 3.48 TNHH2182 pKa = 7.34 DD2183 pKa = 3.71 GTADD2187 pKa = 3.47 TVTIDD2192 pKa = 2.76 IDD2194 pKa = 4.1 TNVLVDD2200 pKa = 4.15 LRR2202 pKa = 11.84 VEE2204 pKa = 3.84 ILSRR2208 pKa = 11.84 DD2209 pKa = 3.7 LQRR2212 pKa = 11.84 GDD2214 pKa = 3.73 FDD2216 pKa = 6.02 GDD2218 pKa = 3.53 GQADD2222 pKa = 3.82 DD2223 pKa = 3.65 GRR2225 pKa = 11.84 YY2226 pKa = 7.14 TISYY2230 pKa = 9.16 AFANRR2235 pKa = 11.84 RR2236 pKa = 11.84 VIQPRR2241 pKa = 11.84 LTVVILDD2248 pKa = 3.77 YY2249 pKa = 11.59 GCDD2252 pKa = 3.47 LRR2254 pKa = 11.84 VDD2256 pKa = 3.66 QVEE2259 pKa = 4.36 VTKK2262 pKa = 11.08
Molecular weight: 234.9 kDa
Isoelectric point according different methods:
IPC2.protein.svr19 3.726
IPC2_protein 3.478
IPC_protein 3.567
Toseland 3.312
ProMoST 3.745
Dawson 3.579
Bjellqvist 3.719
Wikipedia 3.541
Rodwell 3.376
Grimsley 3.21
Solomon 3.567
Lehninger 3.528
Nozaki 3.681
DTASelect 3.999
Thurlkill 3.363
EMBOSS 3.541
Sillero 3.681
Patrickios 1.189
IPC_peptide 3.567
IPC2_peptide 3.656
IPC2.peptide.svr19 3.677
Protein with the highest isoelectric point:
>tr|A0A2X3KK17|A0A2X3KK17_9BACT Probable membrane transporter protein OS=Candidatus Bipolaricaulis anaerobius OX=2026885 GN=BARAN1_0738 PE=3 SV=1
MM1 pKa = 7.4 VFFLLWPIVLIPIGLALRR19 pKa = 11.84 RR20 pKa = 11.84 RR21 pKa = 11.84 FTRR24 pKa = 11.84 RR25 pKa = 11.84 RR26 pKa = 3.37
Molecular weight: 3.24 kDa
Isoelectric point according different methods:
IPC2.protein.svr19 9.43
IPC2_protein 10.921
IPC_protein 12.544
Toseland 12.705
ProMoST 13.203
Dawson 12.705
Bjellqvist 12.705
Wikipedia 13.173
Rodwell 12.193
Grimsley 12.735
Solomon 13.203
Lehninger 13.1
Nozaki 12.705
DTASelect 12.705
Thurlkill 12.705
EMBOSS 13.203
Sillero 12.705
Patrickios 11.974
IPC_peptide 13.203
IPC2_peptide 12.193
IPC2.peptide.svr19 9.149
Peptides (in silico digests for buttom-up proteomics)
Below you can find
in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.
Try ESI
ChTry ESI
ArgC ESI
LysN ESI
TryLysC ESI
Try MALDI
ChTry MALDI
ArgC MALDI
LysN MALDI
TryLysC MALDI
Try LTQ
ChTry LTQ
ArgC LTQ
LysN LTQ
TryLysC LTQ
Try MSlow
ChTry MSlow
ArgC MSlow
LysN MSlow
TryLysC MSlow
Try MShigh
ChTry MShigh
ArgC MShigh
LysN MShigh
TryLysC MShigh
General Statistics
Number of major isoforms
Number of additional isoforms
Number of all proteins
Number of amino acids
Min. Seq. Length
Max. Seq. Length
Avg. Seq. Length
Avg. Mol. Weight
1319
0
1319
415242
20
2262
314.8
34.19
Amino acid frequency
Ala
Cys
Asp
Glu
Phe
Gly
His
Ile
Lys
Leu
11.79 ± 0.126
0.935 ± 0.025
4.875 ± 0.068
6.77 ± 0.071
3.353 ± 0.04
9.494 ± 0.07
2.023 ± 0.031
4.407 ± 0.043
2.468 ± 0.046
11.225 ± 0.097
Met
Asn
Gln
Pro
Arg
Ser
Thr
Val
Trp
Tyr
1.777 ± 0.029
1.734 ± 0.034
5.953 ± 0.052
2.649 ± 0.035
8.197 ± 0.093
4.45 ± 0.053
5.141 ± 0.081
8.818 ± 0.06
1.529 ± 0.031
2.415 ± 0.035
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level
Most of the basic statistics you can see at this page can be downloaded from this CSV file
For dipeptide frequency statistics click here