Panax notoginseng virus B

Taxonomy: Viruses; Riboviria; Orthornavirae; Duplornaviricota; Chrymotiviricetes; Ghabrivirales; Totiviridae; unclassified Totiviridae; Panax notoginseng virus A

Average proteome isoelectric point is 6.53

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    

Protein with the lowest isoelectric point:
>tr|A0A2Z4PGW3|A0A2Z4PGW3_9VIRU RNA-directed RNA polymerase OS=Panax notoginseng virus B OX=2248770 PE=3 SV=1
MM1 pKa = 8.06DD2 pKa = 4.56SFVKK6 pKa = 10.55QFFTEE11 pKa = 4.5FDD13 pKa = 3.7SPGVDD18 pKa = 4.25FNFDD22 pKa = 3.6SDD24 pKa = 4.69LKK26 pKa = 7.94THH28 pKa = 6.63TYY30 pKa = 8.2MGCGLRR36 pKa = 11.84VYY38 pKa = 10.18DD39 pKa = 3.44GHH41 pKa = 7.87INQSRR46 pKa = 11.84HH47 pKa = 3.57FHH49 pKa = 6.71AFQPMTPLGYY59 pKa = 10.23YY60 pKa = 10.12DD61 pKa = 4.73CEE63 pKa = 4.36VTGGGSSLDD72 pKa = 4.19GITKK76 pKa = 10.44NYY78 pKa = 7.14LTPEE82 pKa = 3.98GTVNLVTVADD92 pKa = 4.12TLKK95 pKa = 10.8GSSGLQTAMLSAHH108 pKa = 6.03VSHH111 pKa = 6.18MQHH114 pKa = 6.46WSWADD119 pKa = 3.15NHH121 pKa = 6.69VGLLFNMFRR130 pKa = 11.84YY131 pKa = 10.05VLIEE135 pKa = 4.38KK136 pKa = 9.92IRR138 pKa = 11.84EE139 pKa = 4.15CAGSLDD145 pKa = 4.0GKK147 pKa = 10.69LGLYY151 pKa = 10.27EE152 pKa = 5.11DD153 pKa = 4.08GHH155 pKa = 8.16VGIDD159 pKa = 3.31MDD161 pKa = 4.63QFWEE165 pKa = 4.78DD166 pKa = 4.62EE167 pKa = 4.22YY168 pKa = 11.73CEE170 pKa = 5.05DD171 pKa = 3.64GGARR175 pKa = 11.84KK176 pKa = 8.74WPGGDD181 pKa = 2.9VDD183 pKa = 5.49ASYY186 pKa = 11.25PDD188 pKa = 3.91YY189 pKa = 11.36LRR191 pKa = 11.84LTNTTPSTGDD201 pKa = 2.83WALDD205 pKa = 3.43LRR207 pKa = 11.84GMNARR212 pKa = 11.84DD213 pKa = 3.46ARR215 pKa = 11.84FVLLMMGAWKK225 pKa = 10.15RR226 pKa = 11.84RR227 pKa = 11.84SRR229 pKa = 11.84LRR231 pKa = 11.84LDD233 pKa = 3.38CTTKK237 pKa = 10.77KK238 pKa = 10.8LCDD241 pKa = 3.43CVLYY245 pKa = 10.51RR246 pKa = 11.84SSVEE250 pKa = 3.95VANITDD256 pKa = 4.5WIVDD260 pKa = 3.63KK261 pKa = 10.95EE262 pKa = 4.17KK263 pKa = 11.22GIVPPTLSSSEE274 pKa = 3.47AWQALKK280 pKa = 10.5FYY282 pKa = 8.93VTQNRR287 pKa = 11.84LFDD290 pKa = 4.06HH291 pKa = 7.0FSATLYY297 pKa = 10.45IIATMMYY304 pKa = 9.52QFVPATAEE312 pKa = 3.76ATNWLRR318 pKa = 11.84LKK320 pKa = 8.83WTVNIPTFRR329 pKa = 11.84SVRR332 pKa = 11.84GRR334 pKa = 11.84YY335 pKa = 8.47EE336 pKa = 3.67FLNEE340 pKa = 4.17GEE342 pKa = 4.36PALLSHH348 pKa = 7.09RR349 pKa = 11.84CLNEE353 pKa = 3.06WGYY356 pKa = 11.01INGKK360 pKa = 6.53MEE362 pKa = 4.51KK363 pKa = 9.35VNLMALVFSQAYY375 pKa = 6.63HH376 pKa = 6.12TGLAVRR382 pKa = 11.84GVRR385 pKa = 11.84KK386 pKa = 9.83GLEE389 pKa = 3.98LHH391 pKa = 7.07PDD393 pKa = 4.1DD394 pKa = 5.02IFSSEE399 pKa = 3.31IDD401 pKa = 3.97FYY403 pKa = 11.35TSANFISAAASEE415 pKa = 4.55ATRR418 pKa = 11.84TDD420 pKa = 3.11TPLPGMVGIHH430 pKa = 5.71FVVNDD435 pKa = 3.9DD436 pKa = 3.72FDD438 pKa = 5.38VYY440 pKa = 11.41DD441 pKa = 3.71EE442 pKa = 4.0NRR444 pKa = 11.84RR445 pKa = 11.84IEE447 pKa = 4.05TRR449 pKa = 11.84EE450 pKa = 3.65NDD452 pKa = 3.95DD453 pKa = 3.38EE454 pKa = 5.66HH455 pKa = 8.68LDD457 pKa = 4.21DD458 pKa = 4.13YY459 pKa = 10.7HH460 pKa = 5.99TSKK463 pKa = 11.3DD464 pKa = 3.41KK465 pKa = 11.53VSVKK469 pKa = 10.35KK470 pKa = 10.97GSTLLVDD477 pKa = 4.54VNDD480 pKa = 4.1STLSRR485 pKa = 11.84AALDD489 pKa = 4.77LISKK493 pKa = 9.91KK494 pKa = 10.33IKK496 pKa = 9.48TLMKK500 pKa = 9.96GVRR503 pKa = 11.84AKK505 pKa = 11.13LEE507 pKa = 4.33DD508 pKa = 4.12DD509 pKa = 3.69VDD511 pKa = 4.75FEE513 pKa = 4.62LTDD516 pKa = 3.71EE517 pKa = 4.54EE518 pKa = 5.13KK519 pKa = 10.78LAQEE523 pKa = 4.03GKK525 pKa = 9.93MYY527 pKa = 9.56VTLAADD533 pKa = 3.68EE534 pKa = 4.15QEE536 pKa = 4.16QMEE539 pKa = 4.7EE540 pKa = 4.09KK541 pKa = 10.87VFVHH545 pKa = 5.78MPWYY549 pKa = 8.26TFPGVPTMILPLSPFPYY566 pKa = 8.96NTPFNMKK573 pKa = 9.91GRR575 pKa = 11.84ITTDD579 pKa = 2.15IGKK582 pKa = 9.54VDD584 pKa = 3.38RR585 pKa = 11.84RR586 pKa = 11.84GLRR589 pKa = 11.84LVSKK593 pKa = 7.45TAWEE597 pKa = 4.35VANLMRR603 pKa = 11.84LCGYY607 pKa = 10.22DD608 pKa = 3.06SRR610 pKa = 11.84FRR612 pKa = 11.84DD613 pKa = 3.52GGEE616 pKa = 3.5IAGAGTYY623 pKa = 9.04FSPNDD628 pKa = 3.76ANMVWPVLQVPDD640 pKa = 3.97AQDD643 pKa = 3.78DD644 pKa = 4.18EE645 pKa = 5.47VILTGQIDD653 pKa = 3.76RR654 pKa = 11.84EE655 pKa = 4.29AQFIDD660 pKa = 4.51LPPMFNRR667 pKa = 11.84FFIGKK672 pKa = 8.17EE673 pKa = 3.62VEE675 pKa = 4.03YY676 pKa = 10.0SIKK679 pKa = 10.37VIRR682 pKa = 11.84RR683 pKa = 11.84GTATSFVDD691 pKa = 3.2NRR693 pKa = 11.84KK694 pKa = 9.8DD695 pKa = 3.37VAEE698 pKa = 4.08WGGAVTLTRR707 pKa = 11.84GVTVSYY713 pKa = 10.52NVPEE717 pKa = 4.23NVSKK721 pKa = 10.78LRR723 pKa = 11.84AYY725 pKa = 9.88ISRR728 pKa = 11.84NEE730 pKa = 3.87TGFRR734 pKa = 11.84FVDD737 pKa = 3.36NAQAGVIPMPEE748 pKa = 4.53PDD750 pKa = 4.5LNAQGVAGVV759 pKa = 3.57

Molecular weight:
85.62 kDa
Isoelectric point according different methods:






Protein with the highest isoelectric point:
>tr|A0A2Z4PGW3|A0A2Z4PGW3_9VIRU RNA-directed RNA polymerase OS=Panax notoginseng virus B OX=2248770 PE=3 SV=1
MM1 pKa = 7.09VRR3 pKa = 11.84RR4 pKa = 11.84AMSVAYY10 pKa = 10.17SQVDD14 pKa = 3.47QYY16 pKa = 12.0DD17 pKa = 3.58YY18 pKa = 11.79SDD20 pKa = 3.13WQLFRR25 pKa = 11.84FLRR28 pKa = 11.84RR29 pKa = 11.84VFDD32 pKa = 3.56VDD34 pKa = 3.46RR35 pKa = 11.84KK36 pKa = 10.5LITHH40 pKa = 7.2ARR42 pKa = 11.84TGSGPVEE49 pKa = 4.22GEE51 pKa = 4.01FPRR54 pKa = 11.84AAITGEE60 pKa = 3.91HH61 pKa = 5.97HH62 pKa = 4.7THH64 pKa = 6.33FRR66 pKa = 11.84PEE68 pKa = 4.23EE69 pKa = 3.77VWEE72 pKa = 3.96VAKK75 pKa = 10.32IYY77 pKa = 9.79KK78 pKa = 10.28AKK80 pKa = 10.0LRR82 pKa = 11.84AMSVVYY88 pKa = 10.62RR89 pKa = 11.84NLKK92 pKa = 9.55KK93 pKa = 10.31IEE95 pKa = 4.93GITEE99 pKa = 4.16AVVSTMFLYY108 pKa = 11.02VLFARR113 pKa = 11.84PQIAYY118 pKa = 10.1LFACSRR124 pKa = 11.84RR125 pKa = 11.84IWASKK130 pKa = 10.84DD131 pKa = 3.11VGQLANVLKK140 pKa = 10.58EE141 pKa = 3.37ISTPLKK147 pKa = 10.35SVQNYY152 pKa = 7.34EE153 pKa = 4.21LSDD156 pKa = 3.47VTQLFEE162 pKa = 4.52LQCLVNRR169 pKa = 11.84GIGEE173 pKa = 4.0VDD175 pKa = 2.88WNKK178 pKa = 9.66EE179 pKa = 3.5RR180 pKa = 11.84RR181 pKa = 11.84NRR183 pKa = 11.84EE184 pKa = 3.72CPNVVKK190 pKa = 10.86VDD192 pKa = 3.54VVDD195 pKa = 4.35VYY197 pKa = 11.48KK198 pKa = 10.73EE199 pKa = 3.93AVDD202 pKa = 3.56MFRR205 pKa = 11.84MGVSHH210 pKa = 6.94GYY212 pKa = 10.06KK213 pKa = 9.16YY214 pKa = 11.47ARR216 pKa = 11.84MDD218 pKa = 3.35LKK220 pKa = 10.98KK221 pKa = 10.36YY222 pKa = 10.23IKK224 pKa = 10.33SRR226 pKa = 11.84WEE228 pKa = 3.78WVPSGSVHH236 pKa = 5.32SQYY239 pKa = 10.6IEE241 pKa = 3.94DD242 pKa = 3.44QHH244 pKa = 7.17FIKK247 pKa = 9.43TDD249 pKa = 2.78HH250 pKa = 4.95MHH252 pKa = 5.59RR253 pKa = 11.84TKK255 pKa = 10.62FVTLNMMKK263 pKa = 9.56TEE265 pKa = 3.89HH266 pKa = 6.36LRR268 pKa = 11.84RR269 pKa = 11.84MFQRR273 pKa = 11.84RR274 pKa = 11.84KK275 pKa = 9.8EE276 pKa = 3.99IQAWASVKK284 pKa = 10.46YY285 pKa = 9.66EE286 pKa = 3.86WAKK289 pKa = 10.25QRR291 pKa = 11.84AIYY294 pKa = 10.09GVDD297 pKa = 3.36LTSSVITNFAMFRR310 pKa = 11.84CEE312 pKa = 3.74EE313 pKa = 4.21VFKK316 pKa = 11.14HH317 pKa = 5.86RR318 pKa = 11.84FPVGEE323 pKa = 3.82EE324 pKa = 3.53AAASRR329 pKa = 11.84VHH331 pKa = 6.42KK332 pKa = 9.57RR333 pKa = 11.84LKK335 pKa = 10.36MMLDD339 pKa = 3.72GNEE342 pKa = 4.16SFCYY346 pKa = 10.74DD347 pKa = 3.41FDD349 pKa = 5.14DD350 pKa = 5.86FNAQHH355 pKa = 5.87STEE358 pKa = 3.87SMYY361 pKa = 11.38AVLQAYY367 pKa = 10.6LDD369 pKa = 3.83VFKK372 pKa = 11.5GNMSDD377 pKa = 4.05DD378 pKa = 3.6QVEE381 pKa = 4.01AMKK384 pKa = 10.06WVRR387 pKa = 11.84DD388 pKa = 3.8SILSVKK394 pKa = 8.96VHH396 pKa = 6.03NNEE399 pKa = 3.8KK400 pKa = 10.54NRR402 pKa = 11.84DD403 pKa = 3.37EE404 pKa = 4.32MYY406 pKa = 9.6STNGTLLSGWRR417 pKa = 11.84LTTFMNTALNYY428 pKa = 9.79IYY430 pKa = 10.46FKK432 pKa = 10.92LAGAFDD438 pKa = 3.58IAGVKK443 pKa = 10.5DD444 pKa = 3.91SVHH447 pKa = 6.57NGDD450 pKa = 4.68DD451 pKa = 3.43VLVAIKK457 pKa = 9.97DD458 pKa = 3.81LKK460 pKa = 10.03SACSIHH466 pKa = 6.44QAMAKK471 pKa = 9.75INARR475 pKa = 11.84AQATKK480 pKa = 10.86CNIFSVGEE488 pKa = 3.86FLRR491 pKa = 11.84VEE493 pKa = 4.1HH494 pKa = 6.89KK495 pKa = 10.16ISKK498 pKa = 10.16EE499 pKa = 3.82EE500 pKa = 3.96GLGAQYY506 pKa = 9.05LTRR509 pKa = 11.84AAATLAHH516 pKa = 6.4SRR518 pKa = 11.84IEE520 pKa = 4.27SQEE523 pKa = 3.57PTRR526 pKa = 11.84LVDD529 pKa = 3.96SIKK532 pKa = 11.09GMVTRR537 pKa = 11.84CEE539 pKa = 4.14EE540 pKa = 3.77ITARR544 pKa = 11.84SYY546 pKa = 12.27DD547 pKa = 3.78MVEE550 pKa = 4.0VAYY553 pKa = 10.4HH554 pKa = 7.14LLTEE558 pKa = 4.45SVTRR562 pKa = 11.84LCGIFGVKK570 pKa = 10.02KK571 pKa = 9.32EE572 pKa = 4.81DD573 pKa = 3.4GMKK576 pKa = 8.98VTRR579 pKa = 11.84SHH581 pKa = 6.77LLVGGASEE589 pKa = 4.24TFEE592 pKa = 4.94GIVDD596 pKa = 3.58EE597 pKa = 4.83TIEE600 pKa = 4.26EE601 pKa = 4.12EE602 pKa = 4.6VLIDD606 pKa = 3.38DD607 pKa = 4.5TRR609 pKa = 11.84ITEE612 pKa = 3.96EE613 pKa = 4.09NRR615 pKa = 11.84DD616 pKa = 3.18KK617 pKa = 11.07RR618 pKa = 11.84ATIRR622 pKa = 11.84EE623 pKa = 4.48LMPGINDD630 pKa = 3.3YY631 pKa = 11.75AEE633 pKa = 4.18ILEE636 pKa = 4.34TQYY639 pKa = 11.86GEE641 pKa = 4.96FMPLDD646 pKa = 4.0DD647 pKa = 4.96VRR649 pKa = 11.84KK650 pKa = 9.27KK651 pKa = 10.88VINATHH657 pKa = 6.4RR658 pKa = 11.84QLEE661 pKa = 4.32ITRR664 pKa = 11.84GTNLKK669 pKa = 8.64ITDD672 pKa = 3.23VRR674 pKa = 11.84HH675 pKa = 4.1TVKK678 pKa = 10.95YY679 pKa = 10.12KK680 pKa = 10.43FGRR683 pKa = 11.84ALFRR687 pKa = 11.84MYY689 pKa = 10.45KK690 pKa = 10.24DD691 pKa = 3.45KK692 pKa = 11.74VNIPYY697 pKa = 9.74VEE699 pKa = 4.11KK700 pKa = 10.9ARR702 pKa = 11.84FLGIPPIAMLSHH714 pKa = 7.13SSMKK718 pKa = 10.26FVTKK722 pKa = 10.64LISSVKK728 pKa = 10.58DD729 pKa = 2.94VDD731 pKa = 3.66YY732 pKa = 10.68TLRR735 pKa = 11.84ALLL738 pKa = 4.1

Molecular weight:
85.23 kDa
Isoelectric point according different methods:






Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2

0

2

1497

738

759

748.5

85.42

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.947 ± 0.257

1.202 ± 0.012

7.014 ± 0.826

6.546 ± 0.536

4.743 ± 0.189

6.146 ± 0.976

2.672 ± 0.309

4.81 ± 0.519

5.945 ± 0.86

7.882 ± 0.393

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

3.54 ± 0.176

3.941 ± 0.291

3.006 ± 0.772

2.739 ± 0.169

6.613 ± 0.584

5.945 ± 0.106

6.279 ± 0.409

8.484 ± 0.414

1.67 ± 0.219

3.874 ± 0.133

Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski