Nonlabens phage P12024S

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Inhavirus; Nonlabens virus P12024L

Average proteome isoelectric point is 6.23

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 59 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|I6S2E7|I6S2E7_9CAUD Uncharacterized protein OS=Nonlabens phage P12024S OX=1168478 GN=P12024S_46 PE=4 SV=1
MM1 pKa = 7.22NGYY4 pKa = 9.57YY5 pKa = 10.9LLLEE9 pKa = 4.43YY10 pKa = 10.24IKK12 pKa = 10.5EE13 pKa = 3.99LLISDD18 pKa = 4.22VDD20 pKa = 4.33CNTVTDD26 pKa = 4.12GDD28 pKa = 4.16GLEE31 pKa = 4.83DD32 pKa = 5.11ADD34 pKa = 4.55LQRR37 pKa = 11.84QEE39 pKa = 4.75IYY41 pKa = 10.4PLAHH45 pKa = 6.4IVADD49 pKa = 4.43DD50 pKa = 3.82GTFVNGVMQFNLEE63 pKa = 4.23LFALDD68 pKa = 4.79QYY70 pKa = 11.87DD71 pKa = 3.75EE72 pKa = 4.24QLDD75 pKa = 3.88NDD77 pKa = 3.71RR78 pKa = 11.84DD79 pKa = 3.63IYY81 pKa = 9.7NTQIYY86 pKa = 8.51VLKK89 pKa = 10.61RR90 pKa = 11.84VFNKK94 pKa = 10.44LSVSEE99 pKa = 4.96GITILGDD106 pKa = 3.32GSFQKK111 pKa = 10.61VEE113 pKa = 4.13KK114 pKa = 10.58KK115 pKa = 10.27EE116 pKa = 3.84NNLIGWSLSLVVEE129 pKa = 4.41VADD132 pKa = 4.72DD133 pKa = 3.74VMRR136 pKa = 11.84FCC138 pKa = 6.37

Molecular weight: 15.75 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|I6R9N7|I6R9N7_9CAUD Uncharacterized protein OS=Nonlabens phage P12024S OX=1168478 GN=P12024S_53 PE=4 SV=1
MM1 pKa = 6.88ITQTIRR7 pKa = 11.84TLRR10 pKa = 11.84EE11 pKa = 3.68TNKK14 pKa = 8.97RR15 pKa = 11.84TEE17 pKa = 4.06LTEE20 pKa = 4.11VAKK23 pKa = 10.68GRR25 pKa = 11.84YY26 pKa = 8.88KK27 pKa = 10.96YY28 pKa = 10.03PSNWNEE34 pKa = 3.84FKK36 pKa = 11.03NALKK40 pKa = 10.13WLLRR44 pKa = 11.84KK45 pKa = 9.38KK46 pKa = 10.55

Molecular weight: 5.66 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

59

0

59

11087

38

754

187.9

21.33

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.278 ± 0.518

0.956 ± 0.134

6.864 ± 0.252

7.153 ± 0.354

4.636 ± 0.245

6.178 ± 0.272

1.335 ± 0.188

7.324 ± 0.259

8.487 ± 0.515

8.74 ± 0.283

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.849 ± 0.193

6.07 ± 0.319

3.022 ± 0.236

3.662 ± 0.217

4.014 ± 0.195

6.233 ± 0.342

6.16 ± 0.376

5.628 ± 0.256

1.299 ± 0.158

4.113 ± 0.329
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski