Trichoderma gamsii

Taxonomy: cellular organisms; Eukaryota; Opisthokonta; Fungi; Dikarya; Ascomycota; saccharomyceta; Pezizomycotina; leotiomyceta; sordariomyceta; Sordariomycetes; Hypocreomycetidae; Hypocreales; Hypocreaceae;

Average proteome isoelectric point is 6.39

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 11178 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A2P4ZKP7|A0A2P4ZKP7_9HYPO Uncharacterized protein OS=Trichoderma gamsii OX=398673 GN=TGAM01_v206395 PE=4 SV=1
MM1 pKa = 7.13RR2 pKa = 11.84TSAFAAILGFAVYY15 pKa = 10.09GSQATAINFADD26 pKa = 3.38NWRR29 pKa = 11.84DD30 pKa = 2.95NWRR33 pKa = 11.84DD34 pKa = 3.1NWPTNWPDD42 pKa = 2.89NWSDD46 pKa = 3.15NWPDD50 pKa = 3.11NWPVTWLVSLLGSLNSLNRR69 pKa = 11.84IDD71 pKa = 4.53NLNSIDD77 pKa = 4.23SLSSLDD83 pKa = 4.16SLDD86 pKa = 3.83SLASLASLNGLDD98 pKa = 4.57HH99 pKa = 7.02FPEE102 pKa = 5.02NPCEE106 pKa = 4.06WLGGTCEE113 pKa = 3.7ATAVNFCSGLNDD125 pKa = 3.25IKK127 pKa = 10.87IGVPCGSFGSISVGTAGVGCCWHH150 pKa = 6.73AAII153 pKa = 5.57

Molecular weight: 16.53 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A2P4Z7J2|A0A2P4Z7J2_9HYPO FAD-binding PCMH-type domain-containing protein OS=Trichoderma gamsii OX=398673 GN=TGAM01_v210894 PE=3 SV=1
AA1 pKa = 7.63ALARR5 pKa = 11.84AHH7 pKa = 5.78TAGLGPHH14 pKa = 7.09RR15 pKa = 11.84GRR17 pKa = 11.84SKK19 pKa = 11.0LSRR22 pKa = 11.84KK23 pKa = 9.05PPRR26 pKa = 11.84SWTRR30 pKa = 11.84RR31 pKa = 11.84SRR33 pKa = 11.84VMLRR37 pKa = 11.84LAGRR41 pKa = 11.84TTKK44 pKa = 10.58GSPTHH49 pKa = 6.25

Molecular weight: 5.4 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

11178

0

11178

5506319

26

21960

492.6

54.48

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.885 ± 0.022

1.226 ± 0.009

5.774 ± 0.017

6.133 ± 0.025

3.765 ± 0.014

6.77 ± 0.024

2.359 ± 0.01

5.147 ± 0.017

4.915 ± 0.021

8.947 ± 0.028

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.191 ± 0.009

3.778 ± 0.013

5.826 ± 0.026

4.07 ± 0.014

5.868 ± 0.024

8.339 ± 0.025

5.779 ± 0.016

5.985 ± 0.019

1.474 ± 0.008

2.768 ± 0.011
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski