Aliidiomarina soli

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Idiomarinaceae; Aliidiomarina

Average proteome isoelectric point is 5.96

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2855 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A432WH25|A0A432WH25_9GAMM Long-chain-fatty-acid--CoA ligase FadD OS=Aliidiomarina soli OX=1928574 GN=CWE14_07235 PE=4 SV=1
MM1 pKa = 7.76LKK3 pKa = 10.05PQLSLILKK11 pKa = 9.53VSSLTLAVLLTGCNSSDD28 pKa = 3.61EE29 pKa = 4.58KK30 pKa = 11.28GDD32 pKa = 3.43TYY34 pKa = 10.85TRR36 pKa = 11.84EE37 pKa = 3.96VVVIDD42 pKa = 3.73GQPAIFNGAFFTSLGYY58 pKa = 10.4SIEE61 pKa = 4.25RR62 pKa = 11.84EE63 pKa = 4.12SGQQTTAPWIEE74 pKa = 4.4DD75 pKa = 3.16FTFRR79 pKa = 11.84WGYY82 pKa = 9.84QVTARR87 pKa = 11.84IEE89 pKa = 4.21VVTYY93 pKa = 10.69AEE95 pKa = 4.47PPEE98 pKa = 4.79DD99 pKa = 4.02GPMHH103 pKa = 7.36EE104 pKa = 4.32YY105 pKa = 10.71RR106 pKa = 11.84LLEE109 pKa = 4.21ILDD112 pKa = 3.81SSEE115 pKa = 5.22DD116 pKa = 3.79EE117 pKa = 4.33VGTVYY122 pKa = 11.05SFDD125 pKa = 3.71GVFLRR130 pKa = 11.84NDD132 pKa = 2.88NTFQIDD138 pKa = 3.68EE139 pKa = 4.67DD140 pKa = 4.14NEE142 pKa = 4.53GYY144 pKa = 11.12YY145 pKa = 10.92LFLDD149 pKa = 3.81EE150 pKa = 6.46SFVCAQNINCDD161 pKa = 3.56QLVDD165 pKa = 3.68MSNDD169 pKa = 2.98GGTISLEE176 pKa = 3.93FEE178 pKa = 4.36YY179 pKa = 10.66LGQSDD184 pKa = 4.61DD185 pKa = 3.9RR186 pKa = 11.84PTAVMLTDD194 pKa = 3.7WNN196 pKa = 3.87

Molecular weight: 22.1 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A432WIW2|A0A432WIW2_9GAMM Uncharacterized protein OS=Aliidiomarina soli OX=1928574 GN=CWE14_04690 PE=4 SV=1
MM1 pKa = 7.45KK2 pKa = 9.51RR3 pKa = 11.84TFQPSVLKK11 pKa = 10.49RR12 pKa = 11.84KK13 pKa = 7.97RR14 pKa = 11.84THH16 pKa = 5.89GFRR19 pKa = 11.84ARR21 pKa = 11.84MATKK25 pKa = 10.4NGRR28 pKa = 11.84QVLARR33 pKa = 11.84RR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 9.94GRR39 pKa = 11.84KK40 pKa = 8.67VLSAA44 pKa = 4.05

Molecular weight: 5.15 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2855

0

2855

940704

32

2818

329.5

36.55

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

9.811 ± 0.042

0.86 ± 0.017

5.867 ± 0.031

6.38 ± 0.042

3.885 ± 0.033

7.089 ± 0.042

2.324 ± 0.024

5.306 ± 0.035

3.514 ± 0.044

10.736 ± 0.057

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.506 ± 0.021

3.569 ± 0.028

4.171 ± 0.026

5.232 ± 0.046

5.974 ± 0.033

6.314 ± 0.039

5.078 ± 0.028

7.101 ± 0.036

1.358 ± 0.02

2.925 ± 0.027
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski