Coptotermes formosanus (Formosan subterranean termite)

Taxonomy: cellular organisms; Eukaryota; Opisthokonta; Metazoa; Eumetazoa; Bilateria; Protostomia; Ecdysozoa; Panarthropoda; Arthropoda; Mandibulata; Pancrustacea; Hexapoda; Insecta; Dicondylia; Pterygota; Neoptera; Polyneoptera; Dictyoptera; Blattodea; Blattoidea; Termitoidae; Rhinotermitida

Average proteome isoelectric point is 6.7

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 12806 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A6L2Q6Z9|A0A6L2Q6Z9_COPFO Uncharacterized protein OS=Coptotermes formosanus OX=36987 GN=Cfor_07107 PE=4 SV=1
MM1 pKa = 7.87KK2 pKa = 9.99IPNGTGSGYY11 pKa = 10.29YY12 pKa = 10.27GHH14 pKa = 7.82DD15 pKa = 3.47SSVISYY21 pKa = 10.56LSDD24 pKa = 3.32SSDD27 pKa = 3.24VGNGDD32 pKa = 4.47DD33 pKa = 5.11ADD35 pKa = 4.13SPTLDD40 pKa = 3.84GDD42 pKa = 3.65FSEE45 pKa = 4.66YY46 pKa = 8.46MWMEE50 pKa = 3.9NEE52 pKa = 4.23EE53 pKa = 4.35EE54 pKa = 3.91FDD56 pKa = 3.79KK57 pKa = 11.43QVMQQLEE64 pKa = 4.49EE65 pKa = 4.08EE66 pKa = 4.6ALMEE70 pKa = 4.0QCIEE74 pKa = 4.33AMLEE78 pKa = 4.05DD79 pKa = 3.99EE80 pKa = 5.28RR81 pKa = 11.84EE82 pKa = 3.62IHH84 pKa = 6.59NIHH87 pKa = 5.91NQAMAANGVGVIDD100 pKa = 4.99VRR102 pKa = 11.84QPWSTGTDD110 pKa = 3.67YY111 pKa = 11.55VHH113 pKa = 6.84PTMM116 pKa = 5.78

Molecular weight: 12.98 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A6L2PEC4|A0A6L2PEC4_COPFO Uncharacterized protein OS=Coptotermes formosanus OX=36987 GN=Cfor_03229 PE=4 SV=1
MM1 pKa = 7.47IRR3 pKa = 11.84NLRR6 pKa = 11.84EE7 pKa = 3.71NNAVQQQASVKK18 pKa = 9.6NRR20 pKa = 11.84RR21 pKa = 11.84LAQQMEE27 pKa = 4.18RR28 pKa = 11.84RR29 pKa = 11.84PAVMAALKK37 pKa = 10.24LKK39 pKa = 10.33KK40 pKa = 9.94RR41 pKa = 11.84SLRR44 pKa = 11.84QRR46 pKa = 11.84LGQPVTSSVKK56 pKa = 10.43DD57 pKa = 3.58RR58 pKa = 11.84LTLAGPTRR66 pKa = 11.84GGRR69 pKa = 11.84GNSRR73 pKa = 11.84AQGRR77 pKa = 11.84GRR79 pKa = 11.84SGGRR83 pKa = 11.84GWGSRR88 pKa = 11.84LSRR91 pKa = 11.84SQSMQSVNRR100 pKa = 11.84SGGGGDD106 pKa = 3.39TFRR109 pKa = 11.84LRR111 pKa = 11.84RR112 pKa = 11.84GQGRR116 pKa = 11.84VFRR119 pKa = 11.84GNNSQRR125 pKa = 11.84RR126 pKa = 11.84PFRR129 pKa = 11.84RR130 pKa = 11.84GGRR133 pKa = 11.84PGLGSPRR140 pKa = 11.84GGRR143 pKa = 11.84GLRR146 pKa = 11.84GGRR149 pKa = 11.84GGSVGNRR156 pKa = 11.84FARR159 pKa = 11.84GRR161 pKa = 11.84GGSFF165 pKa = 3.04

Molecular weight: 17.95 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

12806

0

12806

6406585

49

14142

500.3

55.98

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.431 ± 0.021

2.281 ± 0.02

5.25 ± 0.016

6.547 ± 0.031

3.625 ± 0.017

6.023 ± 0.023

2.885 ± 0.012

4.774 ± 0.016

5.747 ± 0.024

9.306 ± 0.032

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.285 ± 0.009

4.311 ± 0.017

5.161 ± 0.029

4.459 ± 0.018

5.51 ± 0.019

8.43 ± 0.033

5.89 ± 0.018

6.985 ± 0.017

1.146 ± 0.008

2.954 ± 0.013
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski