Yunnan orbivirus

Taxonomy: Viruses; Riboviria; Orthornavirae; Duplornaviricota; Resentoviricetes; Reovirales; Reoviridae; Sedoreovirinae; Orbivirus

Average proteome isoelectric point is 7.03

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 10 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|Q2YH50|Q2YH50_9REOV Non-structural protein NS2 OS=Yunnan orbivirus OX=306276 PE=4 SV=1
MM1 pKa = 7.29EE2 pKa = 6.13GIYY5 pKa = 10.7ARR7 pKa = 11.84AFCYY11 pKa = 10.48LEE13 pKa = 4.37CLASNRR19 pKa = 11.84DD20 pKa = 3.11PRR22 pKa = 11.84ARR24 pKa = 11.84RR25 pKa = 11.84TFQPSDD31 pKa = 3.06GFALFVTRR39 pKa = 11.84FNATTDD45 pKa = 3.48RR46 pKa = 11.84PISQTPSTQDD56 pKa = 2.9EE57 pKa = 4.47HH58 pKa = 7.26RR59 pKa = 11.84SCFYY63 pKa = 11.26AGLDD67 pKa = 3.7LVLGALGINFNYY79 pKa = 10.03NLPGYY84 pKa = 7.78TPNVQILSILARR96 pKa = 11.84DD97 pKa = 3.85DD98 pKa = 4.38LPYY101 pKa = 10.48TSEE104 pKa = 4.35AYY106 pKa = 10.33VRR108 pKa = 11.84ASRR111 pKa = 11.84IINEE115 pKa = 4.14PGAGQSTRR123 pKa = 11.84HH124 pKa = 5.36FTLPWPDD131 pKa = 3.19VKK133 pKa = 10.62FLYY136 pKa = 10.18PPATPYY142 pKa = 9.15RR143 pKa = 11.84TAADD147 pKa = 4.27EE148 pKa = 4.3PQPMAVGAQDD158 pKa = 3.55MEE160 pKa = 4.72VTLVPAEE167 pKa = 3.98EE168 pKa = 4.38LEE170 pKa = 4.13ITEE173 pKa = 4.57TVMPNYY179 pKa = 9.57PDD181 pKa = 4.21VINACIIWYY190 pKa = 7.39TLSHH194 pKa = 5.54YY195 pKa = 10.12RR196 pKa = 11.84GPGGALIEE204 pKa = 5.01GSDD207 pKa = 3.77TCQLTIDD214 pKa = 4.35DD215 pKa = 4.84EE216 pKa = 4.42EE217 pKa = 5.06VEE219 pKa = 4.42AGVEE223 pKa = 4.24LIVPVGSPIRR233 pKa = 11.84VINSSAVNTGIIHH246 pKa = 6.08ITVKK250 pKa = 9.7WFTRR254 pKa = 11.84AQPSDD259 pKa = 3.85DD260 pKa = 5.27LYY262 pKa = 10.99DD263 pKa = 3.58TMRR266 pKa = 11.84VDD268 pKa = 3.62IGASYY273 pKa = 10.54SYY275 pKa = 10.89HH276 pKa = 6.03DD277 pKa = 3.97QQWYY281 pKa = 9.91DD282 pKa = 3.38LRR284 pKa = 11.84SYY286 pKa = 11.17LLRR289 pKa = 11.84QMDD292 pKa = 4.14IPPNVPPNEE301 pKa = 4.65PIRR304 pKa = 11.84VANRR308 pKa = 11.84ILALALVSRR317 pKa = 11.84LQNAYY322 pKa = 9.53VAHH325 pKa = 6.6SPMNLQAPQNLNINGQIGVPNAVLDD350 pKa = 4.04ALRR353 pKa = 11.84RR354 pKa = 11.84AA355 pKa = 4.04

Molecular weight: 39.52 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|Q2YH48|Q2YH48_9REOV VP6 OS=Yunnan orbivirus OX=306276 PE=4 SV=1
MM1 pKa = 7.23HH2 pKa = 7.51AAITSMKK9 pKa = 9.86RR10 pKa = 11.84EE11 pKa = 4.3HH12 pKa = 7.11PSHH15 pKa = 6.75LLAVVPASAPRR26 pKa = 11.84YY27 pKa = 7.76EE28 pKa = 4.26EE29 pKa = 4.89GYY31 pKa = 8.43NTEE34 pKa = 4.13NEE36 pKa = 4.12KK37 pKa = 8.33THH39 pKa = 5.97QKK41 pKa = 10.84EE42 pKa = 3.96NLLDD46 pKa = 3.9LSLPGKK52 pKa = 9.32MATKK56 pKa = 10.83AMALDD61 pKa = 3.67VLTTTFGGPHH71 pKa = 6.7GSDD74 pKa = 3.83EE75 pKa = 3.99IQKK78 pKa = 9.62RR79 pKa = 11.84EE80 pKa = 3.71KK81 pKa = 10.11GAYY84 pKa = 8.45VAATQALNEE93 pKa = 4.35DD94 pKa = 3.29KK95 pKa = 10.36GTRR98 pKa = 11.84KK99 pKa = 9.7LRR101 pKa = 11.84VYY103 pKa = 9.65MNHH106 pKa = 6.31QILPRR111 pKa = 11.84LQGKK115 pKa = 9.0LRR117 pKa = 11.84TASIKK122 pKa = 9.89YY123 pKa = 9.67RR124 pKa = 11.84LWLTIEE130 pKa = 4.65IIAALLSITVFGIMATTEE148 pKa = 3.84MEE150 pKa = 4.23QTVDD154 pKa = 2.59TWLKK158 pKa = 8.69EE159 pKa = 3.83KK160 pKa = 10.75FGIRR164 pKa = 11.84MGMSIVSMLATVLLLISSRR183 pKa = 11.84MAGGLRR189 pKa = 11.84EE190 pKa = 4.03SMKK193 pKa = 9.96RR194 pKa = 11.84LKK196 pKa = 10.85RR197 pKa = 11.84EE198 pKa = 3.65VEE200 pKa = 3.7KK201 pKa = 10.9RR202 pKa = 11.84KK203 pKa = 8.04TYY205 pKa = 10.67NYY207 pKa = 9.94VSEE210 pKa = 4.24EE211 pKa = 3.95MALEE215 pKa = 4.34TEE217 pKa = 4.39THH219 pKa = 5.35GKK221 pKa = 9.68EE222 pKa = 3.71MEE224 pKa = 4.24TRR226 pKa = 11.84LSSSKK231 pKa = 10.44YY232 pKa = 9.27PVWFDD237 pKa = 3.4ATGKK241 pKa = 10.44AATAGGWQLMQVV253 pKa = 3.53

Molecular weight: 28.44 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

10

0

10

6263

253

1315

626.3

71.14

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.419 ± 0.557

1.293 ± 0.213

5.668 ± 0.417

6.355 ± 0.433

3.992 ± 0.404

5.173 ± 0.349

2.315 ± 0.272

6.227 ± 0.287

6.099 ± 0.516

9.708 ± 0.481

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

3.082 ± 0.189

4.183 ± 0.253

4.327 ± 0.325

4.135 ± 0.219

6.179 ± 0.158

6.962 ± 0.229

6.722 ± 0.427

6.546 ± 0.224

1.038 ± 0.199

3.577 ± 0.316
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski