Chloebia gouldiae (Gouldian finch) (Erythrura gouldiae)

Taxonomy: cellular organisms; Eukaryota; Opisthokonta; Metazoa; Eumetazoa; Bilateria; Deuterostomia; Chordata; Craniata; Vertebrata; Gnathostomata; Teleostomi; Euteleostomi; Sarcopterygii; Dipnotetrapodomorpha; Tetrapoda; Amniota; Sauropsida; Sauria; Archelosauria;

Average proteome isoelectric point is 6.8

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 18274 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A3L8Q6N5|A0A3L8Q6N5_CHLGU Uncharacterized protein OS=Chloebia gouldiae OX=44316 GN=DV515_00018918 PE=4 SV=1
MM1 pKa = 7.32FLQHH5 pKa = 6.99PSRR8 pKa = 11.84IRR10 pKa = 11.84HH11 pKa = 4.53STSPEE16 pKa = 3.72GFSCWKK22 pKa = 10.66AVTTCPAAASSSWGAGTEE40 pKa = 4.13SSSWGPRR47 pKa = 11.84CAAAAGDD54 pKa = 4.33SDD56 pKa = 4.91PSISDD61 pKa = 3.61PAFSASSAPGAQSPDD76 pKa = 3.12DD77 pKa = 3.98SAPGNSVPGDD87 pKa = 3.85SAPGHH92 pKa = 6.27AALDD96 pKa = 3.86NSASAVSYY104 pKa = 9.32PAFSASSAPGAEE116 pKa = 4.37SPDD119 pKa = 3.72DD120 pKa = 3.95SAASLPDD127 pKa = 3.28NSAPDD132 pKa = 3.28NSVPNNSVPGNSASSALSYY151 pKa = 10.83LAFSASSAPGALSPDD166 pKa = 3.23APVFSASSAHH176 pKa = 6.41GNSAPDD182 pKa = 4.11DD183 pKa = 4.2SAASPPPDD191 pKa = 3.53SASPSPDD198 pKa = 3.51LILFLTLQLFLLPLLLMLHH217 pKa = 6.27LQMLLLLLLQLFLLPLLL234 pKa = 4.46

Molecular weight: 23.31 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A3L8R0J0|A0A3L8R0J0_CHLGU Uncharacterized protein (Fragment) OS=Chloebia gouldiae OX=44316 GN=DV515_00017241 PE=3 SV=1
MM1 pKa = 7.68GGPGAGGLGLGLGLRR16 pKa = 11.84FGSVLALGAQVWLWGLRR33 pKa = 11.84FGSVLGLGLRR43 pKa = 11.84FGSVLGLGLRR53 pKa = 11.84FGSVLALGAQVWLRR67 pKa = 11.84FGAGAQVWLRR77 pKa = 11.84FGSGGSGLAPFWGWGLRR94 pKa = 11.84FGSILGLGLRR104 pKa = 11.84FGSVLRR110 pKa = 11.84LGLRR114 pKa = 11.84FGSVLGLGLRR124 pKa = 11.84FGAGGSGLAPFWGWGLRR141 pKa = 11.84FGSVLGLGAQQ151 pKa = 3.43

Molecular weight: 15.32 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

18273

1

18274

8488823

49

7429

464.5

51.69

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.199 ± 0.022

2.322 ± 0.017

4.742 ± 0.012

7.084 ± 0.027

3.617 ± 0.013

6.76 ± 0.028

2.546 ± 0.008

4.356 ± 0.016

5.77 ± 0.025

9.787 ± 0.023

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.181 ± 0.007

3.603 ± 0.013

6.164 ± 0.028

4.731 ± 0.017

5.694 ± 0.019

8.335 ± 0.025

5.119 ± 0.015

6.087 ± 0.017

1.318 ± 0.008

2.58 ± 0.012
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski