Lactococcus phage c2

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Ceduovirus

Average proteome isoelectric point is 6.2

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 39 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|Q38297|Q38297_BPLC2 Holin OS=Lactococcus phage c2 OX=31537 GN=l2 PE=4 SV=1
MM1 pKa = 7.66AEE3 pKa = 3.91KK4 pKa = 10.59NIYY7 pKa = 9.19FVNDD11 pKa = 3.28EE12 pKa = 4.44VEE14 pKa = 4.24LKK16 pKa = 10.42QVLEE20 pKa = 5.24FIDD23 pKa = 3.55KK24 pKa = 10.01TDD26 pKa = 3.39YY27 pKa = 11.08GVNIDD32 pKa = 3.61KK33 pKa = 10.05TRR35 pKa = 11.84EE36 pKa = 3.6DD37 pKa = 3.69VYY39 pKa = 11.64AVVTSYY45 pKa = 11.55SLPII49 pKa = 4.27

Molecular weight: 5.72 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>sp|Q38305|TMP_BPLC2 Probable tape measure protein OS=Lactococcus phage c2 OX=31537 GN=l10 PE=3 SV=1
MM1 pKa = 7.41ATTNKK6 pKa = 8.11VTGLEE11 pKa = 4.14KK12 pKa = 10.14FTEE15 pKa = 4.18KK16 pKa = 10.32QLKK19 pKa = 9.46KK20 pKa = 10.55VWLEE24 pKa = 3.86MVDD27 pKa = 4.27SFNSNQNTIKK37 pKa = 10.52RR38 pKa = 11.84SYY40 pKa = 10.38KK41 pKa = 10.29SSLGGNFSRR50 pKa = 11.84YY51 pKa = 8.08PVKK54 pKa = 10.65FDD56 pKa = 3.14TKK58 pKa = 10.48KK59 pKa = 10.21INKK62 pKa = 9.44QITRR66 pKa = 11.84SYY68 pKa = 11.42GSLKK72 pKa = 10.3SGNIGVVNGFKK83 pKa = 10.86AKK85 pKa = 10.41DD86 pKa = 3.84EE87 pKa = 4.14SWKK90 pKa = 9.36MLNVLLHH97 pKa = 6.7DD98 pKa = 4.66RR99 pKa = 11.84NLHH102 pKa = 4.29QRR104 pKa = 11.84YY105 pKa = 8.54GQTLVKK111 pKa = 9.46ATHH114 pKa = 6.08EE115 pKa = 4.28MDD117 pKa = 5.68DD118 pKa = 3.25KK119 pKa = 11.12TKK121 pKa = 10.59NIKK124 pKa = 10.05RR125 pKa = 11.84KK126 pKa = 9.41LRR128 pKa = 11.84SIINNGG134 pKa = 3.07

Molecular weight: 15.45 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

39

0

39

6900

22

706

176.9

20.15

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.957 ± 0.563

0.87 ± 0.2

5.971 ± 0.286

7.362 ± 0.444

4.71 ± 0.289

7.029 ± 0.574

1.29 ± 0.208

6.478 ± 0.44

8.826 ± 0.49

8.203 ± 0.481

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.87 ± 0.227

6.536 ± 0.289

2.42 ± 0.311

3.841 ± 0.374

3.522 ± 0.266

5.725 ± 0.355

6.29 ± 0.459

5.928 ± 0.36

1.609 ± 0.256

4.565 ± 0.444
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski