Serinicoccus chungangensis

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Actinomycetia; Micrococcales; Ornithinimicrobiaceae; Serinicoccus

Average proteome isoelectric point is 6.0

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3100 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A0W8IHA6|A0A0W8IHA6_9MICO Uncharacterized protein OS=Serinicoccus chungangensis OX=767452 GN=AVL62_06395 PE=4 SV=1
MM1 pKa = 7.1QNVPRR6 pKa = 11.84RR7 pKa = 11.84AVAAASTAALAVTGLVALSPAVQAAGPGLVVNEE40 pKa = 4.28VYY42 pKa = 10.83GGGGNSGAVYY52 pKa = 8.72THH54 pKa = 7.26DD55 pKa = 3.54FVEE58 pKa = 4.92LVNSTDD64 pKa = 3.87APVDD68 pKa = 3.73LDD70 pKa = 4.18GYY72 pKa = 10.06AVSYY76 pKa = 10.23YY77 pKa = 10.61SSSGNLGNACPLSGTVEE94 pKa = 4.1PGASYY99 pKa = 10.32LIQQNPGSGGTTPLPDD115 pKa = 4.48PDD117 pKa = 4.19IEE119 pKa = 5.47CGASMSGSNGIVEE132 pKa = 4.71LSLDD136 pKa = 3.9GEE138 pKa = 4.76VVDD141 pKa = 4.71LVGYY145 pKa = 10.28GSATRR150 pKa = 11.84FEE152 pKa = 4.82GSGAAPGLSNTTSASRR168 pKa = 11.84SDD170 pKa = 5.22AVDD173 pKa = 3.38TDD175 pKa = 4.61DD176 pKa = 4.57NAADD180 pKa = 4.07FTRR183 pKa = 11.84GEE185 pKa = 4.14PTPTGSGGGTDD196 pKa = 4.74PEE198 pKa = 4.74PEE200 pKa = 4.68PDD202 pKa = 4.21PEE204 pKa = 4.77PVDD207 pKa = 3.44TTIAQIQGTGATSPLEE223 pKa = 4.09GQPVNTSGVVTAAYY237 pKa = 7.02PTGGFNGVYY246 pKa = 9.96LQTAGSGGAAKK257 pKa = 10.6APGDD261 pKa = 3.65ASDD264 pKa = 4.91GVFLYY269 pKa = 10.88SSWAADD275 pKa = 3.29NLEE278 pKa = 4.33IGDD281 pKa = 4.26CVEE284 pKa = 4.18VEE286 pKa = 4.1DD287 pKa = 5.57GEE289 pKa = 4.61VVEE292 pKa = 4.65YY293 pKa = 11.24NGLTEE298 pKa = 3.84ISGGFVTVVDD308 pKa = 3.95GCEE311 pKa = 3.78AVVPTVLSSLPATDD325 pKa = 3.86AEE327 pKa = 4.46KK328 pKa = 10.56EE329 pKa = 4.38VYY331 pKa = 10.09EE332 pKa = 4.37GMLVQPEE339 pKa = 4.26GTYY342 pKa = 10.34TITNNYY348 pKa = 8.78QLNQYY353 pKa = 8.5GQLGLAVGDD362 pKa = 3.85EE363 pKa = 4.48PLYY366 pKa = 10.59QATDD370 pKa = 3.41QVLPGPEE377 pKa = 3.7AEE379 pKa = 5.09AYY381 pKa = 9.34QAANQEE387 pKa = 4.37KK388 pKa = 10.68YY389 pKa = 8.76ITLDD393 pKa = 4.52DD394 pKa = 4.57GSSWDD399 pKa = 3.6YY400 pKa = 11.26VRR402 pKa = 11.84NSTAQDD408 pKa = 3.27SPLPYY413 pKa = 10.42LSAQEE418 pKa = 3.88PHH420 pKa = 6.01RR421 pKa = 11.84TGSQVTFEE429 pKa = 4.27QPVVLDD435 pKa = 5.5YY436 pKa = 11.09RR437 pKa = 11.84FQWNYY442 pKa = 9.26QPVGQVVGSDD452 pKa = 3.81SPVDD456 pKa = 4.3PISSEE461 pKa = 3.74NDD463 pKa = 2.98RR464 pKa = 11.84EE465 pKa = 4.18YY466 pKa = 11.18AAPEE470 pKa = 3.77VGGNIQIGAFNVLNYY485 pKa = 10.2FSDD488 pKa = 3.97LGQDD492 pKa = 3.83EE493 pKa = 4.64EE494 pKa = 5.12DD495 pKa = 3.9CDD497 pKa = 4.26FFADD501 pKa = 4.04RR502 pKa = 11.84FGNPVATDD510 pKa = 3.8FCEE513 pKa = 4.62VRR515 pKa = 11.84GAWSEE520 pKa = 3.95QAFADD525 pKa = 3.89QQAKK529 pKa = 10.07LVTAINGTDD538 pKa = 3.57AEE540 pKa = 4.52VLALMEE546 pKa = 4.69IEE548 pKa = 4.24NSAALSYY555 pKa = 10.96VDD557 pKa = 4.25HH558 pKa = 7.11PRR560 pKa = 11.84DD561 pKa = 3.19KK562 pKa = 11.32ALADD566 pKa = 3.79LVAALNAEE574 pKa = 4.25AGEE577 pKa = 4.17QRR579 pKa = 11.84WAYY582 pKa = 10.15APSPTVTPPNEE593 pKa = 4.14DD594 pKa = 3.45VIRR597 pKa = 11.84TAFIYY602 pKa = 10.84DD603 pKa = 3.65PDD605 pKa = 3.82QVQLLGPSMIQLDD618 pKa = 3.89DD619 pKa = 3.69AFANARR625 pKa = 11.84YY626 pKa = 8.83PLAQKK631 pKa = 10.36FKK633 pKa = 10.33ATGTGKK639 pKa = 9.81PFVAVANHH647 pKa = 6.25FKK649 pKa = 11.01SKK651 pKa = 10.83GSGEE655 pKa = 4.27DD656 pKa = 3.57DD657 pKa = 3.4GTGQGNANPSRR668 pKa = 11.84IAQAEE673 pKa = 4.06ALTAWSEE680 pKa = 4.21EE681 pKa = 3.98MFEE684 pKa = 4.69DD685 pKa = 4.41EE686 pKa = 6.5AIFLMGDD693 pKa = 3.48FNAYY697 pKa = 9.82SRR699 pKa = 11.84EE700 pKa = 3.97DD701 pKa = 3.45PVRR704 pKa = 11.84IIEE707 pKa = 4.39DD708 pKa = 3.03AGYY711 pKa = 8.96TNLARR716 pKa = 11.84ADD718 pKa = 4.22EE719 pKa = 4.91PDD721 pKa = 3.07SMTYY725 pKa = 10.04QFSGRR730 pKa = 11.84LGSLDD735 pKa = 3.49HH736 pKa = 6.92VFANEE741 pKa = 3.45KK742 pKa = 10.04AQRR745 pKa = 11.84LVTGAGVWDD754 pKa = 3.79INADD758 pKa = 3.44EE759 pKa = 5.23SIAFQYY765 pKa = 10.49SRR767 pKa = 11.84RR768 pKa = 11.84NYY770 pKa = 10.23NVVDD774 pKa = 4.23FHH776 pKa = 9.45SDD778 pKa = 3.36DD779 pKa = 3.58QFASSDD785 pKa = 3.68HH786 pKa = 7.02DD787 pKa = 3.92PVLVGLDD794 pKa = 3.06TGNRR798 pKa = 11.84GKK800 pKa = 10.93GKK802 pKa = 10.06NN803 pKa = 3.34

Molecular weight: 84.58 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0W8I4D2|A0A0W8I4D2_9MICO Uncharacterized protein OS=Serinicoccus chungangensis OX=767452 GN=AVL62_14825 PE=4 SV=1
MM1 pKa = 7.69SKK3 pKa = 9.0RR4 pKa = 11.84TFQPNNRR11 pKa = 11.84RR12 pKa = 11.84RR13 pKa = 11.84AKK15 pKa = 9.97KK16 pKa = 9.33HH17 pKa = 4.25GFRR20 pKa = 11.84LRR22 pKa = 11.84MRR24 pKa = 11.84TRR26 pKa = 11.84AGRR29 pKa = 11.84SILNARR35 pKa = 11.84RR36 pKa = 11.84RR37 pKa = 11.84KK38 pKa = 9.28GRR40 pKa = 11.84SSISAA45 pKa = 3.4

Molecular weight: 5.37 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3100

0

3100

1026549

37

1907

331.1

35.42

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

12.987 ± 0.061

0.655 ± 0.012

6.416 ± 0.038

6.192 ± 0.043

2.481 ± 0.027

9.712 ± 0.041

2.288 ± 0.026

2.871 ± 0.031

1.32 ± 0.028

10.63 ± 0.052

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.84 ± 0.017

1.355 ± 0.02

5.88 ± 0.032

3.104 ± 0.023

8.053 ± 0.059

4.965 ± 0.031

6.069 ± 0.033

9.744 ± 0.047

1.627 ± 0.019

1.811 ± 0.018
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski