Sinorhizobium phage ort11

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Schitoviridae; Huelvavirus; Sinorhizobium virus ort11

Average proteome isoelectric point is 6.02

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 103 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A5C2H7D4|A0A5C2H7D4_9CAUD Uncharacterized protein OS=Sinorhizobium phage ort11 OX=2599764 GN=Smphiort11_093 PE=4 SV=1
MM1 pKa = 7.4NAQTPDD7 pKa = 3.47EE8 pKa = 5.01LMADD12 pKa = 3.68YY13 pKa = 10.59CYY15 pKa = 10.25TSSSEE20 pKa = 4.25TQTTSDD26 pKa = 3.2TPYY29 pKa = 10.44EE30 pKa = 4.13IDD32 pKa = 4.53LAPQEE37 pKa = 4.45QYY39 pKa = 11.84DD40 pKa = 3.81FGDD43 pKa = 3.2WATTKK48 pKa = 10.3FSSYY52 pKa = 11.51LEE54 pKa = 3.93FTITNSGYY62 pKa = 11.15ADD64 pKa = 3.48VTISRR69 pKa = 11.84VDD71 pKa = 3.51LAGEE75 pKa = 4.2FMLLEE80 pKa = 4.91PIPNKK85 pKa = 9.78IAAGAVYY92 pKa = 9.48TGKK95 pKa = 10.79LYY97 pKa = 9.88FAPEE101 pKa = 4.23TVGSKK106 pKa = 9.3TGMLSVEE113 pKa = 4.4AEE115 pKa = 3.91NALGDD120 pKa = 4.34KK121 pKa = 10.2VIKK124 pKa = 10.64LLGTAWDD131 pKa = 4.6FLDD134 pKa = 5.43LDD136 pKa = 3.56IKK138 pKa = 11.21GIVNEE143 pKa = 4.83AGITLNDD150 pKa = 3.51FPLWEE155 pKa = 4.43AQLDD159 pKa = 4.41VIVNTDD165 pKa = 3.63LPVALVV171 pKa = 3.3

Molecular weight: 18.7 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A5C2H2W1|A0A5C2H2W1_9CAUD Uncharacterized protein OS=Sinorhizobium phage ort11 OX=2599764 GN=Smphiort11_018 PE=4 SV=1
MM1 pKa = 7.42SKK3 pKa = 10.71YY4 pKa = 10.29LAGYY8 pKa = 9.47GLLLIAIATFVAISPLKK25 pKa = 9.4PARR28 pKa = 11.84TYY30 pKa = 10.81MLVQIQNDD38 pKa = 3.65AQIVLHH44 pKa = 6.71RR45 pKa = 11.84NMSVTRR51 pKa = 11.84CSLTKK56 pKa = 9.48RR57 pKa = 11.84QYY59 pKa = 10.3PNSHH63 pKa = 6.36CVQNLLTNKK72 pKa = 8.4QARR75 pKa = 11.84NN76 pKa = 3.38

Molecular weight: 8.59 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

103

0

103

23275

41

3418

226.0

25.31

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.905 ± 0.523

0.816 ± 0.133

6.157 ± 0.149

7.076 ± 0.259

3.936 ± 0.209

6.544 ± 0.261

1.865 ± 0.167

6.393 ± 0.221

6.389 ± 0.37

8.275 ± 0.206

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.672 ± 0.115

5.276 ± 0.165

4.082 ± 0.183

4.537 ± 0.274

4.498 ± 0.216

5.912 ± 0.239

6.436 ± 0.215

6.552 ± 0.204

1.16 ± 0.128

3.519 ± 0.257
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski