Bat polyomavirus

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cossaviricota; Papovaviricetes; Sepolyvirales; Polyomaviridae; unclassified Polyomaviridae

Average proteome isoelectric point is 5.9

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A0D3MCH7|A0A0D3MCH7_9POLY Capsid protein VP1 OS=Bat polyomavirus OX=1221637 PE=3 SV=1
MM1 pKa = 7.32GAFLAVLAEE10 pKa = 4.12VFEE13 pKa = 4.94LSTVTGLSVEE23 pKa = 4.57TILSGEE29 pKa = 4.19AFTTAEE35 pKa = 4.49LLQSHH40 pKa = 7.16IANLVTFGGLTEE52 pKa = 4.58AEE54 pKa = 3.95ALAAAEE60 pKa = 4.44VSAEE64 pKa = 4.14AYY66 pKa = 9.4SALSTLSEE74 pKa = 4.26TFPQAFATLAATEE87 pKa = 4.17FATTGTLTVGAAIAAALYY105 pKa = 9.05PYY107 pKa = 10.11YY108 pKa = 10.41YY109 pKa = 9.96DD110 pKa = 3.53YY111 pKa = 11.49SVPISNLNRR120 pKa = 11.84SMALQQWIPDD130 pKa = 3.67YY131 pKa = 11.47DD132 pKa = 4.39LDD134 pKa = 4.33FPGVRR139 pKa = 11.84PLVRR143 pKa = 11.84FLNYY147 pKa = 9.28IDD149 pKa = 5.05PYY151 pKa = 9.41TWASDD156 pKa = 3.75LYY158 pKa = 10.54HH159 pKa = 7.21SIGRR163 pKa = 11.84YY164 pKa = 7.36FWEE167 pKa = 3.99TAQRR171 pKa = 11.84IGQNVIEE178 pKa = 4.87EE179 pKa = 4.45EE180 pKa = 4.26LTDD183 pKa = 3.73LTRR186 pKa = 11.84DD187 pKa = 3.3LAVRR191 pKa = 11.84SVTSISEE198 pKa = 4.22MIAHH202 pKa = 6.01YY203 pKa = 10.34FEE205 pKa = 4.03NARR208 pKa = 11.84WAVSLLPRR216 pKa = 11.84SIYY219 pKa = 10.73NSLEE223 pKa = 3.92TYY225 pKa = 8.7YY226 pKa = 10.86TEE228 pKa = 4.99LPGINPIQARR238 pKa = 11.84QLYY241 pKa = 8.75RR242 pKa = 11.84KK243 pKa = 10.03LGEE246 pKa = 4.25TPIHH250 pKa = 7.02RR251 pKa = 11.84GRR253 pKa = 11.84GPGGPARR260 pKa = 11.84VRR262 pKa = 11.84RR263 pKa = 11.84SPYY266 pKa = 9.93LGRR269 pKa = 11.84GPGGPATIFGNIQGGAVPQQFSAQYY294 pKa = 9.04VEE296 pKa = 5.64RR297 pKa = 11.84YY298 pKa = 7.17PPPGGADD305 pKa = 2.91QRR307 pKa = 11.84TAADD311 pKa = 3.13WMLPLILGLYY321 pKa = 10.37GDD323 pKa = 5.15ISPSWRR329 pKa = 11.84RR330 pKa = 11.84TLEE333 pKa = 4.14DD334 pKa = 3.88LEE336 pKa = 4.44EE337 pKa = 4.75EE338 pKa = 4.1EE339 pKa = 6.42DD340 pKa = 4.22GPQKK344 pKa = 10.53KK345 pKa = 9.6KK346 pKa = 10.29PRR348 pKa = 11.84RR349 pKa = 11.84AA350 pKa = 3.22

Molecular weight: 38.59 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0D3MDQ1|A0A0D3MDQ1_9POLY Large T antigen OS=Bat polyomavirus OX=1221637 PE=4 SV=1
MM1 pKa = 7.85DD2 pKa = 3.57HH3 pKa = 6.67TLTRR7 pKa = 11.84EE8 pKa = 3.46EE9 pKa = 4.37SLRR12 pKa = 11.84LMEE15 pKa = 5.3LLSLPMEE22 pKa = 4.35QYY24 pKa = 11.84GNFPLMRR31 pKa = 11.84KK32 pKa = 9.48AFLKK36 pKa = 10.02KK37 pKa = 10.34CKK39 pKa = 9.55ILHH42 pKa = 6.42PDD44 pKa = 2.78KK45 pKa = 11.36GGNQEE50 pKa = 4.08LAKK53 pKa = 10.45EE54 pKa = 4.36LISLYY59 pKa = 10.52KK60 pKa = 10.27RR61 pKa = 11.84LEE63 pKa = 4.09EE64 pKa = 4.17MLPTLNPEE72 pKa = 4.14EE73 pKa = 4.55SFSTSQVHH81 pKa = 5.85EE82 pKa = 4.36SSDD85 pKa = 3.45LFIWMDD91 pKa = 3.73DD92 pKa = 3.25WPKK95 pKa = 11.02CKK97 pKa = 9.86IGANPTCRR105 pKa = 11.84CLFCLLQRR113 pKa = 11.84NHH115 pKa = 6.59RR116 pKa = 11.84KK117 pKa = 9.37RR118 pKa = 11.84RR119 pKa = 11.84TPWPKK124 pKa = 9.25VWGDD128 pKa = 3.59CFCFRR133 pKa = 11.84CYY135 pKa = 9.21ITWFGLEE142 pKa = 4.03NSWMVFLSWKK152 pKa = 9.59EE153 pKa = 3.9IVGKK157 pKa = 8.41TPYY160 pKa = 9.94RR161 pKa = 11.84VLNII165 pKa = 3.89

Molecular weight: 19.7 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4

0

4

1540

165

657

385.0

43.59

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.558 ± 1.349

2.143 ± 0.624

4.935 ± 0.544

6.948 ± 0.36

5.26 ± 0.923

6.039 ± 0.909

1.688 ± 0.26

5.0 ± 0.193

5.714 ± 1.386

10.455 ± 0.593

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.468 ± 0.402

4.416 ± 0.596

6.299 ± 0.623

4.675 ± 0.493

5.0 ± 0.656

5.779 ± 0.31

6.169 ± 0.381

5.519 ± 0.682

1.558 ± 0.424

3.377 ± 0.723
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski