Streptococcus phage Javan290

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; unclassified Siphoviridae

Average proteome isoelectric point is 6.33

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 64 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A4D6AZV3|A0A4D6AZV3_9CAUD Uncharacterized protein OS=Streptococcus phage Javan290 OX=2548096 GN=Javan290_0042 PE=4 SV=1
MM1 pKa = 7.28NWNSLHH7 pKa = 7.27DD8 pKa = 4.03FLGEE12 pKa = 4.04NIKK15 pKa = 8.88VTFIDD20 pKa = 3.72DD21 pKa = 3.85TVLEE25 pKa = 5.53GYY27 pKa = 10.73CNTYY31 pKa = 8.94TGKK34 pKa = 10.67LDD36 pKa = 3.87TEE38 pKa = 4.29EE39 pKa = 4.24EE40 pKa = 4.66LYY42 pKa = 11.18DD43 pKa = 4.35EE44 pKa = 4.51ITIKK48 pKa = 9.44TAQHH52 pKa = 5.7QYY54 pKa = 10.43VGFNEE59 pKa = 4.33SEE61 pKa = 3.99IKK63 pKa = 10.7SIEE66 pKa = 4.08LVV68 pKa = 3.34

Molecular weight: 7.91 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A4D6B266|A0A4D6B266_9CAUD Uncharacterized protein OS=Streptococcus phage Javan290 OX=2548096 GN=Javan290_0058 PE=4 SV=1
MM1 pKa = 7.8AKK3 pKa = 8.42NTKK6 pKa = 7.57QTSAKK11 pKa = 9.64VARR14 pKa = 11.84QASKK18 pKa = 10.86ALRR21 pKa = 11.84DD22 pKa = 3.82GRR24 pKa = 11.84SSARR28 pKa = 11.84TKK30 pKa = 10.73SIAGSALSQAKK41 pKa = 9.93GKK43 pKa = 9.92SSKK46 pKa = 10.49RR47 pKa = 11.84KK48 pKa = 9.17

Molecular weight: 5.03 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

64

0

64

10479

38

778

163.7

18.42

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.1 ± 0.486

0.553 ± 0.099

6.06 ± 0.282

8.006 ± 0.515

3.846 ± 0.194

7.224 ± 0.495

1.622 ± 0.138

6.346 ± 0.263

7.768 ± 0.467

8.465 ± 0.285

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.529 ± 0.168

4.695 ± 0.286

2.72 ± 0.184

4.18 ± 0.161

4.686 ± 0.342

6.422 ± 0.357

5.831 ± 0.266

7.062 ± 0.344

1.241 ± 0.112

3.645 ± 0.246
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski