Lentzea albidocapillata

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Actinomycetia; Pseudonocardiales; Pseudonocardiaceae; Lentzea

Average proteome isoelectric point is 6.3

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 8155 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1W2F6X4|A0A1W2F6X4_9PSEU Polar amino acid transport system substrate-binding protein OS=Lentzea albidocapillata OX=40571 GN=SAMN05660733_05210 PE=4 SV=1
MM1 pKa = 7.77RR2 pKa = 11.84KK3 pKa = 9.01NVKK6 pKa = 9.24TGLLAAAVATGLVLAGPTASANTSAFHH33 pKa = 6.32PFGMGGTEE41 pKa = 4.42HH42 pKa = 6.01QMAWEE47 pKa = 4.21WFSHH51 pKa = 5.04QAAAYY56 pKa = 8.61AAAGHH61 pKa = 6.6GGHH64 pKa = 6.42SGDD67 pKa = 4.62GGDD70 pKa = 4.13AGSANTATTGDD81 pKa = 4.04SGDD84 pKa = 4.27SGDD87 pKa = 5.46SGDD90 pKa = 4.18TGHH93 pKa = 6.59NSAWVMCVHH102 pKa = 6.04SHH104 pKa = 6.89CEE106 pKa = 3.65ADD108 pKa = 3.84ADD110 pKa = 4.48SGDD113 pKa = 4.1SGDD116 pKa = 3.99TSTGDD121 pKa = 3.09TGNAANNSSTNGGDD135 pKa = 3.23TGHH138 pKa = 7.01GGNGGDD144 pKa = 4.31ADD146 pKa = 4.26ADD148 pKa = 3.85AEE150 pKa = 4.34NAVATIWDD158 pKa = 3.74EE159 pKa = 4.46DD160 pKa = 4.29GEE162 pKa = 5.22HH163 pKa = 6.83GDD165 pKa = 4.01EE166 pKa = 5.06DD167 pKa = 3.74NSSAHH172 pKa = 6.5SEE174 pKa = 4.15DD175 pKa = 3.79STHH178 pKa = 7.07GDD180 pKa = 3.55DD181 pKa = 4.18STHH184 pKa = 6.65HH185 pKa = 6.95GDD187 pKa = 3.69STHH190 pKa = 6.81HH191 pKa = 6.9GDD193 pKa = 3.89STHH196 pKa = 6.9HH197 pKa = 6.95GDD199 pKa = 4.36NEE201 pKa = 4.17ATASATAGHH210 pKa = 6.7GGDD213 pKa = 4.21SGDD216 pKa = 3.9GGDD219 pKa = 3.78AVSSNTATSGDD230 pKa = 3.89SGDD233 pKa = 4.47SGDD236 pKa = 5.46SGDD239 pKa = 4.18TGHH242 pKa = 6.59NSAWVMCVHH251 pKa = 6.84SDD253 pKa = 4.14CEE255 pKa = 4.26VGTDD259 pKa = 3.97SGDD262 pKa = 3.64SGDD265 pKa = 3.99TSTGDD270 pKa = 3.09TGNAANNSSTNGGDD284 pKa = 3.23TGHH287 pKa = 7.01GGNGGDD293 pKa = 3.9ADD295 pKa = 4.02AAAGTSTAVEE305 pKa = 3.88WDD307 pKa = 3.45DD308 pKa = 5.64DD309 pKa = 4.09EE310 pKa = 5.0NAAHH314 pKa = 7.07GDD316 pKa = 3.93SEE318 pKa = 4.33ATAAATAGNGGSSGAGGDD336 pKa = 3.28AVSVNTATTGDD347 pKa = 3.94SGDD350 pKa = 4.31SGDD353 pKa = 5.21SGNTGHH359 pKa = 6.66NSAWVMCAHH368 pKa = 7.13SICLTSTDD376 pKa = 4.32SGDD379 pKa = 4.03SGDD382 pKa = 3.99TSTGDD387 pKa = 3.12TGNATNNSSTNGGDD401 pKa = 3.23TGHH404 pKa = 7.01GGNGGDD410 pKa = 4.26ADD412 pKa = 5.52AMATDD417 pKa = 4.52LNEE420 pKa = 4.63GEE422 pKa = 5.09DD423 pKa = 3.89DD424 pKa = 3.63

Molecular weight: 40.52 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1W2EP90|A0A1W2EP90_9PSEU Alpha-galactosidase OS=Lentzea albidocapillata OX=40571 GN=SAMN05660733_04216 PE=3 SV=1
MM1 pKa = 7.53SKK3 pKa = 10.53GKK5 pKa = 8.66RR6 pKa = 11.84TFQPNNRR13 pKa = 11.84RR14 pKa = 11.84RR15 pKa = 11.84AKK17 pKa = 8.7THH19 pKa = 5.15GFRR22 pKa = 11.84LRR24 pKa = 11.84MRR26 pKa = 11.84TRR28 pKa = 11.84AGRR31 pKa = 11.84AILAARR37 pKa = 11.84RR38 pKa = 11.84SKK40 pKa = 10.82GRR42 pKa = 11.84ATLSAA47 pKa = 4.08

Molecular weight: 5.4 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

8155

0

8155

2634138

39

12847

323.0

34.79

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

12.514 ± 0.035

0.797 ± 0.009

5.942 ± 0.025

5.614 ± 0.024

3.043 ± 0.016

8.871 ± 0.027

2.245 ± 0.014

3.605 ± 0.021

2.522 ± 0.026

10.416 ± 0.048

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.847 ± 0.012

2.229 ± 0.025

5.549 ± 0.024

3.029 ± 0.019

7.457 ± 0.032

5.518 ± 0.019

6.047 ± 0.031

9.154 ± 0.033

1.589 ± 0.013

2.011 ± 0.014
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski