Amino acid dipepetide frequency for Hubei arthropod virus 3

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
7.631AlaAla: 7.631 ± 0.0
0.954AlaCys: 0.954 ± 0.0
4.134AlaAsp: 4.134 ± 0.0
3.816AlaGlu: 3.816 ± 0.0
5.405AlaPhe: 5.405 ± 0.0
5.405AlaGly: 5.405 ± 0.0
2.544AlaHis: 2.544 ± 0.0
4.452AlaIle: 4.452 ± 0.0
2.862AlaLys: 2.862 ± 0.0
8.585AlaLeu: 8.585 ± 0.0
2.862AlaMet: 2.862 ± 0.0
1.59AlaAsn: 1.59 ± 0.0
2.862AlaPro: 2.862 ± 0.0
3.18AlaGln: 3.18 ± 0.0
3.816AlaArg: 3.816 ± 0.0
6.041AlaSer: 6.041 ± 0.0
6.359AlaThr: 6.359 ± 0.0
4.134AlaVal: 4.134 ± 0.0
0.318AlaTrp: 0.318 ± 0.0
1.59AlaTyr: 1.59 ± 0.0
0.0AlaXaa: 0.0 ± 0.0
Cys
1.272CysAla: 1.272 ± 0.0
0.954CysCys: 0.954 ± 0.0
0.954CysAsp: 0.954 ± 0.0
0.636CysGlu: 0.636 ± 0.0
0.954CysPhe: 0.954 ± 0.0
0.954CysGly: 0.954 ± 0.0
0.0CysHis: 0.0 ± 0.0
0.636CysIle: 0.636 ± 0.0
0.636CysLys: 0.636 ± 0.0
0.636CysLeu: 0.636 ± 0.0
0.0CysMet: 0.0 ± 0.0
1.272CysAsn: 1.272 ± 0.0
0.954CysPro: 0.954 ± 0.0
0.0CysGln: 0.0 ± 0.0
0.954CysArg: 0.954 ± 0.0
0.954CysSer: 0.954 ± 0.0
0.636CysThr: 0.636 ± 0.0
0.0CysVal: 0.0 ± 0.0
0.0CysTrp: 0.0 ± 0.0
0.954CysTyr: 0.954 ± 0.0
0.0CysXaa: 0.0 ± 0.0
Asp
3.816AspAla: 3.816 ± 0.0
0.318AspCys: 0.318 ± 0.0
2.544AspAsp: 2.544 ± 0.0
3.498AspGlu: 3.498 ± 0.0
4.452AspPhe: 4.452 ± 0.0
4.452AspGly: 4.452 ± 0.0
0.318AspHis: 0.318 ± 0.0
3.18AspIle: 3.18 ± 0.0
2.544AspLys: 2.544 ± 0.0
4.769AspLeu: 4.769 ± 0.0
0.636AspMet: 0.636 ± 0.0
1.908AspAsn: 1.908 ± 0.0
1.908AspPro: 1.908 ± 0.0
0.636AspGln: 0.636 ± 0.0
1.272AspArg: 1.272 ± 0.0
3.18AspSer: 3.18 ± 0.0
2.226AspThr: 2.226 ± 0.0
2.544AspVal: 2.544 ± 0.0
1.59AspTrp: 1.59 ± 0.0
1.59AspTyr: 1.59 ± 0.0
0.0AspXaa: 0.0 ± 0.0
Glu
4.134GluAla: 4.134 ± 0.0
0.318GluCys: 0.318 ± 0.0
1.59GluAsp: 1.59 ± 0.0
3.498GluGlu: 3.498 ± 0.0
3.816GluPhe: 3.816 ± 0.0
2.226GluGly: 2.226 ± 0.0
1.59GluHis: 1.59 ± 0.0
6.359GluIle: 6.359 ± 0.0
3.18GluLys: 3.18 ± 0.0
4.452GluLeu: 4.452 ± 0.0
1.908GluMet: 1.908 ± 0.0
1.908GluAsn: 1.908 ± 0.0
1.59GluPro: 1.59 ± 0.0
2.544GluGln: 2.544 ± 0.0
3.816GluArg: 3.816 ± 0.0
2.544GluSer: 2.544 ± 0.0
2.226GluThr: 2.226 ± 0.0
3.498GluVal: 3.498 ± 0.0
0.318GluTrp: 0.318 ± 0.0
2.226GluTyr: 2.226 ± 0.0
0.0GluXaa: 0.0 ± 0.0
Phe
5.087PheAla: 5.087 ± 0.0
0.318PheCys: 0.318 ± 0.0
3.18PheAsp: 3.18 ± 0.0
2.862PheGlu: 2.862 ± 0.0
1.59PhePhe: 1.59 ± 0.0
2.862PheGly: 2.862 ± 0.0
1.908PheHis: 1.908 ± 0.0
4.134PheIle: 4.134 ± 0.0
3.816PheLys: 3.816 ± 0.0
2.862PheLeu: 2.862 ± 0.0
1.272PheMet: 1.272 ± 0.0
2.226PheAsn: 2.226 ± 0.0
3.498PhePro: 3.498 ± 0.0
3.18PheGln: 3.18 ± 0.0
0.954PheArg: 0.954 ± 0.0
6.041PheSer: 6.041 ± 0.0
4.134PheThr: 4.134 ± 0.0
4.452PheVal: 4.452 ± 0.0
0.318PheTrp: 0.318 ± 0.0
1.59PheTyr: 1.59 ± 0.0
0.0PheXaa: 0.0 ± 0.0
Gly
5.405GlyAla: 5.405 ± 0.0
0.0GlyCys: 0.0 ± 0.0
2.544GlyAsp: 2.544 ± 0.0
1.272GlyGlu: 1.272 ± 0.0
3.18GlyPhe: 3.18 ± 0.0
1.908GlyGly: 1.908 ± 0.0
1.59GlyHis: 1.59 ± 0.0
2.544GlyIle: 2.544 ± 0.0
3.18GlyLys: 3.18 ± 0.0
4.134GlyLeu: 4.134 ± 0.0
1.908GlyMet: 1.908 ± 0.0
2.226GlyAsn: 2.226 ± 0.0
0.954GlyPro: 0.954 ± 0.0
2.544GlyGln: 2.544 ± 0.0
1.908GlyArg: 1.908 ± 0.0
3.498GlySer: 3.498 ± 0.0
6.041GlyThr: 6.041 ± 0.0
5.087GlyVal: 5.087 ± 0.0
0.318GlyTrp: 0.318 ± 0.0
2.544GlyTyr: 2.544 ± 0.0
0.0GlyXaa: 0.0 ± 0.0
His
0.954HisAla: 0.954 ± 0.0
0.0HisCys: 0.0 ± 0.0
0.636HisAsp: 0.636 ± 0.0
2.544HisGlu: 2.544 ± 0.0
1.908HisPhe: 1.908 ± 0.0
0.636HisGly: 0.636 ± 0.0
0.636HisHis: 0.636 ± 0.0
1.908HisIle: 1.908 ± 0.0
1.272HisLys: 1.272 ± 0.0
2.226HisLeu: 2.226 ± 0.0
0.318HisMet: 0.318 ± 0.0
1.59HisAsn: 1.59 ± 0.0
1.59HisPro: 1.59 ± 0.0
1.272HisGln: 1.272 ± 0.0
1.59HisArg: 1.59 ± 0.0
1.908HisSer: 1.908 ± 0.0
0.0HisThr: 0.0 ± 0.0
1.59HisVal: 1.59 ± 0.0
0.318HisTrp: 0.318 ± 0.0
1.272HisTyr: 1.272 ± 0.0
0.0HisXaa: 0.0 ± 0.0
Ile
3.498IleAla: 3.498 ± 0.0
1.272IleCys: 1.272 ± 0.0
3.18IleAsp: 3.18 ± 0.0
1.908IleGlu: 1.908 ± 0.0
2.226IlePhe: 2.226 ± 0.0
2.544IleGly: 2.544 ± 0.0
0.954IleHis: 0.954 ± 0.0
5.087IleIle: 5.087 ± 0.0
4.452IleLys: 4.452 ± 0.0
4.769IleLeu: 4.769 ± 0.0
0.954IleMet: 0.954 ± 0.0
1.59IleAsn: 1.59 ± 0.0
4.452IlePro: 4.452 ± 0.0
2.544IleGln: 2.544 ± 0.0
4.134IleArg: 4.134 ± 0.0
4.452IleSer: 4.452 ± 0.0
5.723IleThr: 5.723 ± 0.0
5.405IleVal: 5.405 ± 0.0
0.318IleTrp: 0.318 ± 0.0
1.908IleTyr: 1.908 ± 0.0
0.0IleXaa: 0.0 ± 0.0
Lys
4.452LysAla: 4.452 ± 0.0
0.636LysCys: 0.636 ± 0.0
1.908LysAsp: 1.908 ± 0.0
1.908LysGlu: 1.908 ± 0.0
4.769LysPhe: 4.769 ± 0.0
2.226LysGly: 2.226 ± 0.0
2.226LysHis: 2.226 ± 0.0
4.769LysIle: 4.769 ± 0.0
2.862LysLys: 2.862 ± 0.0
3.18LysLeu: 3.18 ± 0.0
2.226LysMet: 2.226 ± 0.0
1.272LysAsn: 1.272 ± 0.0
2.544LysPro: 2.544 ± 0.0
0.954LysGln: 0.954 ± 0.0
1.908LysArg: 1.908 ± 0.0
2.862LysSer: 2.862 ± 0.0
2.544LysThr: 2.544 ± 0.0
2.544LysVal: 2.544 ± 0.0
1.272LysTrp: 1.272 ± 0.0
2.226LysTyr: 2.226 ± 0.0
0.0LysXaa: 0.0 ± 0.0
Leu
6.677LeuAla: 6.677 ± 0.0
0.318LeuCys: 0.318 ± 0.0
5.087LeuAsp: 5.087 ± 0.0
4.452LeuGlu: 4.452 ± 0.0
2.544LeuPhe: 2.544 ± 0.0
5.087LeuGly: 5.087 ± 0.0
1.272LeuHis: 1.272 ± 0.0
3.498LeuIle: 3.498 ± 0.0
2.862LeuLys: 2.862 ± 0.0
9.857LeuLeu: 9.857 ± 0.0
1.272LeuMet: 1.272 ± 0.0
4.452LeuAsn: 4.452 ± 0.0
6.677LeuPro: 6.677 ± 0.0
3.816LeuGln: 3.816 ± 0.0
4.769LeuArg: 4.769 ± 0.0
7.631LeuSer: 7.631 ± 0.0
4.769LeuThr: 4.769 ± 0.0
2.862LeuVal: 2.862 ± 0.0
0.636LeuTrp: 0.636 ± 0.0
3.18LeuTyr: 3.18 ± 0.0
0.0LeuXaa: 0.0 ± 0.0
Met
2.544MetAla: 2.544 ± 0.0
0.318MetCys: 0.318 ± 0.0
0.954MetAsp: 0.954 ± 0.0
0.636MetGlu: 0.636 ± 0.0
0.318MetPhe: 0.318 ± 0.0
0.318MetGly: 0.318 ± 0.0
0.954MetHis: 0.954 ± 0.0
0.636MetIle: 0.636 ± 0.0
0.954MetLys: 0.954 ± 0.0
2.226MetLeu: 2.226 ± 0.0
0.636MetMet: 0.636 ± 0.0
1.59MetAsn: 1.59 ± 0.0
1.908MetPro: 1.908 ± 0.0
3.816MetGln: 3.816 ± 0.0
0.954MetArg: 0.954 ± 0.0
1.272MetSer: 1.272 ± 0.0
2.226MetThr: 2.226 ± 0.0
0.954MetVal: 0.954 ± 0.0
0.954MetTrp: 0.954 ± 0.0
0.318MetTyr: 0.318 ± 0.0
0.0MetXaa: 0.0 ± 0.0
Asn
2.544AsnAla: 2.544 ± 0.0
0.636AsnCys: 0.636 ± 0.0
0.954AsnAsp: 0.954 ± 0.0
2.544AsnGlu: 2.544 ± 0.0
3.498AsnPhe: 3.498 ± 0.0
2.226AsnGly: 2.226 ± 0.0
0.954AsnHis: 0.954 ± 0.0
3.18AsnIle: 3.18 ± 0.0
2.226AsnLys: 2.226 ± 0.0
2.862AsnLeu: 2.862 ± 0.0
1.59AsnMet: 1.59 ± 0.0
1.272AsnAsn: 1.272 ± 0.0
2.544AsnPro: 2.544 ± 0.0
1.272AsnGln: 1.272 ± 0.0
2.226AsnArg: 2.226 ± 0.0
3.18AsnSer: 3.18 ± 0.0
2.862AsnThr: 2.862 ± 0.0
2.544AsnVal: 2.544 ± 0.0
0.0AsnTrp: 0.0 ± 0.0
1.272AsnTyr: 1.272 ± 0.0
0.0AsnXaa: 0.0 ± 0.0
Pro
3.18ProAla: 3.18 ± 0.0
1.272ProCys: 1.272 ± 0.0
1.908ProAsp: 1.908 ± 0.0
2.226ProGlu: 2.226 ± 0.0
2.862ProPhe: 2.862 ± 0.0
3.498ProGly: 3.498 ± 0.0
0.636ProHis: 0.636 ± 0.0
5.087ProIle: 5.087 ± 0.0
2.862ProLys: 2.862 ± 0.0
5.087ProLeu: 5.087 ± 0.0
1.272ProMet: 1.272 ± 0.0
2.544ProAsn: 2.544 ± 0.0
5.087ProPro: 5.087 ± 0.0
4.134ProGln: 4.134 ± 0.0
1.272ProArg: 1.272 ± 0.0
6.041ProSer: 6.041 ± 0.0
3.816ProThr: 3.816 ± 0.0
4.134ProVal: 4.134 ± 0.0
0.318ProTrp: 0.318 ± 0.0
1.272ProTyr: 1.272 ± 0.0
0.0ProXaa: 0.0 ± 0.0
Gln
4.452GlnAla: 4.452 ± 0.0
0.318GlnCys: 0.318 ± 0.0
1.59GlnAsp: 1.59 ± 0.0
1.908GlnGlu: 1.908 ± 0.0
1.59GlnPhe: 1.59 ± 0.0
1.272GlnGly: 1.272 ± 0.0
1.908GlnHis: 1.908 ± 0.0
1.59GlnIle: 1.59 ± 0.0
1.272GlnLys: 1.272 ± 0.0
2.544GlnLeu: 2.544 ± 0.0
0.954GlnMet: 0.954 ± 0.0
1.908GlnAsn: 1.908 ± 0.0
2.226GlnPro: 2.226 ± 0.0
2.544GlnGln: 2.544 ± 0.0
1.908GlnArg: 1.908 ± 0.0
4.134GlnSer: 4.134 ± 0.0
3.498GlnThr: 3.498 ± 0.0
3.498GlnVal: 3.498 ± 0.0
0.636GlnTrp: 0.636 ± 0.0
1.59GlnTyr: 1.59 ± 0.0
0.0GlnXaa: 0.0 ± 0.0
Arg
3.498ArgAla: 3.498 ± 0.0
0.318ArgCys: 0.318 ± 0.0
2.226ArgAsp: 2.226 ± 0.0
4.769ArgGlu: 4.769 ± 0.0
2.226ArgPhe: 2.226 ± 0.0
1.908ArgGly: 1.908 ± 0.0
1.272ArgHis: 1.272 ± 0.0
0.954ArgIle: 0.954 ± 0.0
2.226ArgLys: 2.226 ± 0.0
3.18ArgLeu: 3.18 ± 0.0
0.636ArgMet: 0.636 ± 0.0
1.59ArgAsn: 1.59 ± 0.0
3.816ArgPro: 3.816 ± 0.0
3.18ArgGln: 3.18 ± 0.0
2.862ArgArg: 2.862 ± 0.0
5.723ArgSer: 5.723 ± 0.0
2.862ArgThr: 2.862 ± 0.0
2.544ArgVal: 2.544 ± 0.0
0.318ArgTrp: 0.318 ± 0.0
1.908ArgTyr: 1.908 ± 0.0
0.0ArgXaa: 0.0 ± 0.0
Ser
4.452SerAla: 4.452 ± 0.0
0.318SerCys: 0.318 ± 0.0
5.405SerAsp: 5.405 ± 0.0
5.723SerGlu: 5.723 ± 0.0
4.452SerPhe: 4.452 ± 0.0
3.498SerGly: 3.498 ± 0.0
2.226SerHis: 2.226 ± 0.0
5.723SerIle: 5.723 ± 0.0
5.405SerLys: 5.405 ± 0.0
4.134SerLeu: 4.134 ± 0.0
2.862SerMet: 2.862 ± 0.0
4.134SerAsn: 4.134 ± 0.0
4.134SerPro: 4.134 ± 0.0
1.908SerGln: 1.908 ± 0.0
3.816SerArg: 3.816 ± 0.0
9.221SerSer: 9.221 ± 0.0
8.903SerThr: 8.903 ± 0.0
5.087SerVal: 5.087 ± 0.0
1.272SerTrp: 1.272 ± 0.0
3.498SerTyr: 3.498 ± 0.0
0.0SerXaa: 0.0 ± 0.0
Thr
6.677ThrAla: 6.677 ± 0.0
2.226ThrCys: 2.226 ± 0.0
2.226ThrAsp: 2.226 ± 0.0
3.498ThrGlu: 3.498 ± 0.0
5.087ThrPhe: 5.087 ± 0.0
4.769ThrGly: 4.769 ± 0.0
1.59ThrHis: 1.59 ± 0.0
2.862ThrIle: 2.862 ± 0.0
2.544ThrLys: 2.544 ± 0.0
7.949ThrLeu: 7.949 ± 0.0
1.272ThrMet: 1.272 ± 0.0
2.544ThrAsn: 2.544 ± 0.0
5.723ThrPro: 5.723 ± 0.0
1.908ThrGln: 1.908 ± 0.0
3.816ThrArg: 3.816 ± 0.0
5.405ThrSer: 5.405 ± 0.0
5.723ThrThr: 5.723 ± 0.0
4.769ThrVal: 4.769 ± 0.0
0.954ThrTrp: 0.954 ± 0.0
2.226ThrTyr: 2.226 ± 0.0
0.0ThrXaa: 0.0 ± 0.0
Val
5.087ValAla: 5.087 ± 0.0
1.59ValCys: 1.59 ± 0.0
2.544ValAsp: 2.544 ± 0.0
3.816ValGlu: 3.816 ± 0.0
2.862ValPhe: 2.862 ± 0.0
4.452ValGly: 4.452 ± 0.0
0.636ValHis: 0.636 ± 0.0
2.226ValIle: 2.226 ± 0.0
3.18ValLys: 3.18 ± 0.0
3.816ValLeu: 3.816 ± 0.0
0.318ValMet: 0.318 ± 0.0
2.226ValAsn: 2.226 ± 0.0
3.816ValPro: 3.816 ± 0.0
0.636ValGln: 0.636 ± 0.0
3.18ValArg: 3.18 ± 0.0
7.631ValSer: 7.631 ± 0.0
5.723ValThr: 5.723 ± 0.0
4.452ValVal: 4.452 ± 0.0
0.954ValTrp: 0.954 ± 0.0
2.226ValTyr: 2.226 ± 0.0
0.0ValXaa: 0.0 ± 0.0
Trp
1.272TrpAla: 1.272 ± 0.0
0.318TrpCys: 0.318 ± 0.0
1.272TrpAsp: 1.272 ± 0.0
1.272TrpGlu: 1.272 ± 0.0
0.318TrpPhe: 0.318 ± 0.0
0.318TrpGly: 0.318 ± 0.0
0.0TrpHis: 0.0 ± 0.0
0.318TrpIle: 0.318 ± 0.0
0.318TrpLys: 0.318 ± 0.0
0.636TrpLeu: 0.636 ± 0.0
0.318TrpMet: 0.318 ± 0.0
0.636TrpAsn: 0.636 ± 0.0
0.954TrpPro: 0.954 ± 0.0
0.318TrpGln: 0.318 ± 0.0
0.954TrpArg: 0.954 ± 0.0
0.954TrpSer: 0.954 ± 0.0
0.636TrpThr: 0.636 ± 0.0
0.318TrpVal: 0.318 ± 0.0
0.0TrpTrp: 0.0 ± 0.0
0.636TrpTyr: 0.636 ± 0.0
0.0TrpXaa: 0.0 ± 0.0
Tyr
1.908TyrAla: 1.908 ± 0.0
0.954TyrCys: 0.954 ± 0.0
2.544TyrAsp: 2.544 ± 0.0
0.954TyrGlu: 0.954 ± 0.0
2.226TyrPhe: 2.226 ± 0.0
2.226TyrGly: 2.226 ± 0.0
0.954TyrHis: 0.954 ± 0.0
2.226TyrIle: 2.226 ± 0.0
0.954TyrLys: 0.954 ± 0.0
3.816TyrLeu: 3.816 ± 0.0
0.954TyrMet: 0.954 ± 0.0
1.908TyrAsn: 1.908 ± 0.0
1.272TyrPro: 1.272 ± 0.0
0.954TyrGln: 0.954 ± 0.0
1.908TyrArg: 1.908 ± 0.0
3.498TyrSer: 3.498 ± 0.0
2.862TyrThr: 2.862 ± 0.0
0.954TyrVal: 0.954 ± 0.0
0.954TyrTrp: 0.954 ± 0.0
1.59TyrTyr: 1.59 ± 0.0
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.0XaaGly: 0.0 ± 0.0
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.0XaaLeu: 0.0 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.0XaaThr: 0.0 ± 0.0
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 1 proteins (3146 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski