Tomato yellow leaf curl Indonesia virus-[Lembang]

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Repensiviricetes; Geplafuvirales; Geminiviridae; Begomovirus; Tomato yellow leaf curl Indonesia virus

Average proteome isoelectric point is 8.01

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 6 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|Q9QD51|Q9QD51_9GEMI Protein V2 OS=Tomato yellow leaf curl Indonesia virus-[Lembang] OX=395349 GN=V2 PE=3 SV=1
MM1 pKa = 8.06WDD3 pKa = 3.35PLLNEE8 pKa = 4.99FPDD11 pKa = 3.86SVHH14 pKa = 6.81GFRR17 pKa = 11.84CMLAIKK23 pKa = 9.6YY24 pKa = 8.46LQGVEE29 pKa = 3.81ATYY32 pKa = 11.13APDD35 pKa = 3.34TVGYY39 pKa = 10.59DD40 pKa = 3.39LVRR43 pKa = 11.84DD44 pKa = 4.64LISVVRR50 pKa = 11.84ASNYY54 pKa = 10.28AEE56 pKa = 3.93ACRR59 pKa = 11.84RR60 pKa = 11.84YY61 pKa = 10.06SLFRR65 pKa = 11.84SRR67 pKa = 11.84IEE69 pKa = 4.04STPSSQLRR77 pKa = 11.84QPRR80 pKa = 11.84YY81 pKa = 9.33QPCCCTHH88 pKa = 6.58CPRR91 pKa = 11.84HH92 pKa = 5.91KK93 pKa = 10.64SKK95 pKa = 10.98EE96 pKa = 4.01VLDD99 pKa = 4.98FSAYY103 pKa = 10.04VPEE106 pKa = 4.69AQDD109 pKa = 4.72LPDD112 pKa = 3.76VPNSS116 pKa = 3.4

Molecular weight: 13.29 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|Q9QD51|Q9QD51_9GEMI Protein V2 OS=Tomato yellow leaf curl Indonesia virus-[Lembang] OX=395349 GN=V2 PE=3 SV=1
MM1 pKa = 7.76LKK3 pKa = 10.25RR4 pKa = 11.84AGDD7 pKa = 3.5IAFSGPVSKK16 pKa = 10.59VRR18 pKa = 11.84RR19 pKa = 11.84RR20 pKa = 11.84LNYY23 pKa = 9.91DD24 pKa = 3.02SPGTSRR30 pKa = 11.84AAVLTALGINRR41 pKa = 11.84KK42 pKa = 9.5KK43 pKa = 10.54SWTSRR48 pKa = 11.84PMYY51 pKa = 9.55RR52 pKa = 11.84KK53 pKa = 8.49PRR55 pKa = 11.84IYY57 pKa = 10.79RR58 pKa = 11.84MYY60 pKa = 9.46RR61 pKa = 11.84TADD64 pKa = 3.31VPRR67 pKa = 11.84GCEE70 pKa = 4.41GPCKK74 pKa = 9.83IQSFEE79 pKa = 4.02SRR81 pKa = 11.84HH82 pKa = 6.29DD83 pKa = 3.27IAHH86 pKa = 6.41TGKK89 pKa = 10.37VMCVTDD95 pKa = 3.4VTRR98 pKa = 11.84GGGLTHH104 pKa = 6.43RR105 pKa = 11.84TGKK108 pKa = 10.01RR109 pKa = 11.84FCVKK113 pKa = 10.06SLYY116 pKa = 10.17ILGKK120 pKa = 9.29IWMDD124 pKa = 3.37EE125 pKa = 4.04NIKK128 pKa = 9.32TKK130 pKa = 10.61NHH132 pKa = 5.92TNTVMFYY139 pKa = 9.52VVRR142 pKa = 11.84DD143 pKa = 3.66RR144 pKa = 11.84RR145 pKa = 11.84PYY147 pKa = 9.21GTPQDD152 pKa = 3.82FGQVFNMFDD161 pKa = 3.99NEE163 pKa = 4.11PSTATVKK170 pKa = 10.85NDD172 pKa = 2.82LRR174 pKa = 11.84DD175 pKa = 3.42RR176 pKa = 11.84FQVLRR181 pKa = 11.84KK182 pKa = 8.36FTATVVGGQYY192 pKa = 10.67ACKK195 pKa = 9.94EE196 pKa = 3.83QTLVRR201 pKa = 11.84KK202 pKa = 9.44FMRR205 pKa = 11.84LNNYY209 pKa = 7.92VVYY212 pKa = 10.63NHH214 pKa = 6.28QEE216 pKa = 3.67TAKK219 pKa = 10.86YY220 pKa = 9.93EE221 pKa = 4.15NHH223 pKa = 6.41TEE225 pKa = 3.99NALLLYY231 pKa = 8.57MASTHH236 pKa = 6.41ASNPVYY242 pKa = 9.86ATLKK246 pKa = 9.47IRR248 pKa = 11.84IYY250 pKa = 10.59FYY252 pKa = 11.38DD253 pKa = 4.2SITNN257 pKa = 3.6

Molecular weight: 29.68 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

6

0

6

1069

65

362

178.2

20.45

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.332 ± 0.593

2.245 ± 0.468

5.051 ± 0.448

4.022 ± 0.675

4.397 ± 0.524

4.864 ± 0.499

3.742 ± 0.449

5.426 ± 0.975

6.08 ± 0.749

7.858 ± 0.729

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.152 ± 0.503

6.268 ± 0.638

5.987 ± 0.733

4.303 ± 0.652

7.016 ± 1.198

7.858 ± 1.403

5.893 ± 0.845

5.893 ± 1.126

1.31 ± 0.179

4.303 ± 0.623
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski