Lagenorhynchus acutus papillomavirus

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cossaviricota; Papovaviricetes; Zurhausenvirales; Papillomaviridae; Firstpapillomavirinae; Upsilonpapillomavirus; Upsilonpapillomavirus 1; Tursiops truncatus papillomavirus 1; Tursiops truncatus papillomavirus type 3

Average proteome isoelectric point is 6.14

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 6 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|F2VIS6|F2VIS6_9PAPI Regulatory protein E2 OS=Lagenorhynchus acutus papillomavirus OX=706530 GN=E2 PE=3 SV=1
MM1 pKa = 7.49DD2 pKa = 5.06TSPGTDD8 pKa = 3.51PLEE11 pKa = 4.7GGCNDD16 pKa = 3.24WVLLEE21 pKa = 4.11AAEE24 pKa = 4.54AGGSGIDD31 pKa = 3.57EE32 pKa = 4.39EE33 pKa = 4.44EE34 pKa = 5.66GEE36 pKa = 4.82DD37 pKa = 4.03EE38 pKa = 4.94DD39 pKa = 6.69DD40 pKa = 4.54SGEE43 pKa = 4.39DD44 pKa = 3.24MLDD47 pKa = 4.33FIDD50 pKa = 6.17DD51 pKa = 3.45SSTFQNAEE59 pKa = 3.78TQLYY63 pKa = 9.34CRR65 pKa = 11.84QLQVEE70 pKa = 4.24QQRR73 pKa = 11.84IDD75 pKa = 3.71DD76 pKa = 3.98EE77 pKa = 4.87RR78 pKa = 11.84VAQALKK84 pKa = 10.61RR85 pKa = 11.84KK86 pKa = 9.29FLDD89 pKa = 3.61SPKK92 pKa = 10.75SKK94 pKa = 10.57VDD96 pKa = 3.54SEE98 pKa = 4.24LSPRR102 pKa = 11.84LAAISLQEE110 pKa = 3.72QQRR113 pKa = 11.84RR114 pKa = 11.84GRR116 pKa = 11.84ARR118 pKa = 11.84RR119 pKa = 11.84RR120 pKa = 11.84LYY122 pKa = 10.58KK123 pKa = 10.64DD124 pKa = 2.99SGHH127 pKa = 6.54GDD129 pKa = 3.36SLEE132 pKa = 4.38AEE134 pKa = 4.57SEE136 pKa = 3.99EE137 pKa = 5.23SMVCRR142 pKa = 11.84NVQVPKK148 pKa = 10.11NQTMDD153 pKa = 3.21AVGAGEE159 pKa = 4.02GARR162 pKa = 11.84PKK164 pKa = 10.57EE165 pKa = 4.12VGNASTQEE173 pKa = 4.08VQCAGMSEE181 pKa = 4.42EE182 pKa = 4.53SACSVTQILRR192 pKa = 11.84AGKK195 pKa = 9.04PRR197 pKa = 11.84ALLLGVFKK205 pKa = 10.63EE206 pKa = 4.3AFGCSFADD214 pKa = 3.49LTRR217 pKa = 11.84CFKK220 pKa = 10.71SDD222 pKa = 3.09KK223 pKa = 9.94TVNDD227 pKa = 3.65DD228 pKa = 3.31WTCFIVGVPCSLEE241 pKa = 3.97GAISDD246 pKa = 4.06LLKK249 pKa = 10.58PSTLFTHH256 pKa = 5.85VTTATSKK263 pKa = 10.97YY264 pKa = 9.42GLTVLLLVQWKK275 pKa = 7.96TGKK278 pKa = 10.03SRR280 pKa = 11.84EE281 pKa = 4.38TVGNTLAGLLSVDD294 pKa = 3.48KK295 pKa = 10.75QQIVCEE301 pKa = 4.12PPKK304 pKa = 10.15IRR306 pKa = 11.84HH307 pKa = 6.0LGAAMFWYY315 pKa = 10.17KK316 pKa = 10.57KK317 pKa = 9.88AISSACVVTGEE328 pKa = 4.13MPVWILKK335 pKa = 9.21QVSIQDD341 pKa = 3.51QLGDD345 pKa = 3.43VCQFSLSVMIQWAYY359 pKa = 11.29DD360 pKa = 3.46NGHH363 pKa = 6.33DD364 pKa = 3.83TEE366 pKa = 4.17EE367 pKa = 5.15AIAYY371 pKa = 7.49EE372 pKa = 4.3YY373 pKa = 11.18AALADD378 pKa = 3.76EE379 pKa = 5.25DD380 pKa = 4.38KK381 pKa = 11.21NAEE384 pKa = 3.76AFLRR388 pKa = 11.84SNCQPKK394 pKa = 9.82YY395 pKa = 11.15VKK397 pKa = 10.49DD398 pKa = 3.74CANMLRR404 pKa = 11.84LYY406 pKa = 10.52KK407 pKa = 9.99RR408 pKa = 11.84AEE410 pKa = 3.82MRR412 pKa = 11.84KK413 pKa = 8.42MSMGQWIKK421 pKa = 10.58HH422 pKa = 5.65KK423 pKa = 10.28CDD425 pKa = 3.22AVQGEE430 pKa = 4.77GDD432 pKa = 3.62WKK434 pKa = 10.9HH435 pKa = 5.91VMNFLKK441 pKa = 10.72FQGIEE446 pKa = 3.78IMPFLIDD453 pKa = 4.22FRR455 pKa = 11.84LFLKK459 pKa = 10.08GIPKK463 pKa = 9.5RR464 pKa = 11.84NCMVLYY470 pKa = 10.16GPPNTGKK477 pKa = 10.5SLFAMSLIHH486 pKa = 7.02LLGGKK491 pKa = 8.88VLSYY495 pKa = 11.26VNSSSHH501 pKa = 6.44FWLQPVADD509 pKa = 4.63CKK511 pKa = 11.08VALIDD516 pKa = 5.26DD517 pKa = 4.58ATASTWDD524 pKa = 3.48YY525 pKa = 11.51ADD527 pKa = 3.31TYY529 pKa = 10.59LRR531 pKa = 11.84NVLDD535 pKa = 4.54GNPMSLDD542 pKa = 3.9SKK544 pKa = 10.75HH545 pKa = 6.22KK546 pKa = 10.68APMQITCPPLLITTNCNVLEE566 pKa = 4.17NNKK569 pKa = 8.69WKK571 pKa = 10.35YY572 pKa = 8.63LHH574 pKa = 6.59SRR576 pKa = 11.84LRR578 pKa = 11.84VYY580 pKa = 10.62NFHH583 pKa = 6.91NEE585 pKa = 3.89CPLNSRR591 pKa = 11.84GEE593 pKa = 4.14PEE595 pKa = 3.97FQLTKK600 pKa = 10.74VNWKK604 pKa = 10.57AFFNKK609 pKa = 9.44CWAKK613 pKa = 10.79LSLDD617 pKa = 4.02EE618 pKa = 5.34GDD620 pKa = 4.06EE621 pKa = 4.2GHH623 pKa = 6.59NGSPLQPLRR632 pKa = 11.84CVARR636 pKa = 11.84AADD639 pKa = 3.71EE640 pKa = 4.44ADD642 pKa = 3.13

Molecular weight: 71.64 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|F2VIS7|F2VIS7_9PAPI E4 protein (Fragment) OS=Lagenorhynchus acutus papillomavirus OX=706530 GN=E4 PE=4 SV=1
MM1 pKa = 7.7KK2 pKa = 7.83EE3 pKa = 4.08TKK5 pKa = 9.57DD6 pKa = 3.47TMEE9 pKa = 4.24VLCSRR14 pKa = 11.84LDD16 pKa = 3.6ALQEE20 pKa = 3.93QQMKK24 pKa = 10.69LIEE27 pKa = 4.43TDD29 pKa = 4.55DD30 pKa = 4.08GDD32 pKa = 4.23LEE34 pKa = 4.57NVLLYY39 pKa = 10.63FGLLRR44 pKa = 11.84KK45 pKa = 8.29EE46 pKa = 4.27TMLLYY51 pKa = 10.38AANEE55 pKa = 4.08RR56 pKa = 11.84GHH58 pKa = 6.39KK59 pKa = 10.06KK60 pKa = 10.45VGFTMVPNKK69 pKa = 9.76KK70 pKa = 10.08ACEE73 pKa = 3.86EE74 pKa = 3.94NAKK77 pKa = 10.3KK78 pKa = 10.23CIRR81 pKa = 11.84MHH83 pKa = 6.51LAVSSLLSSLFAKK96 pKa = 9.26EE97 pKa = 4.1KK98 pKa = 9.92WFLSQVSYY106 pKa = 11.49EE107 pKa = 4.28MFQTPPVEE115 pKa = 4.28TFKK118 pKa = 11.36KK119 pKa = 9.52EE120 pKa = 3.69GRR122 pKa = 11.84TVTVTFDD129 pKa = 4.45DD130 pKa = 4.83DD131 pKa = 3.92EE132 pKa = 4.8QNSMEE137 pKa = 4.38YY138 pKa = 10.56VCWTRR143 pKa = 11.84IYY145 pKa = 10.37CQLPNGEE152 pKa = 4.27WGCYY156 pKa = 8.43CAVVCYY162 pKa = 10.23EE163 pKa = 4.27GIYY166 pKa = 10.42YY167 pKa = 10.35DD168 pKa = 3.69VEE170 pKa = 4.15GEE172 pKa = 3.86KK173 pKa = 10.45RR174 pKa = 11.84FYY176 pKa = 11.51VDD178 pKa = 5.11FLSEE182 pKa = 3.88ALKK185 pKa = 11.11YY186 pKa = 9.33GTGEE190 pKa = 3.83KK191 pKa = 8.11WTVLYY196 pKa = 10.43DD197 pKa = 3.72GKK199 pKa = 10.9AITDD203 pKa = 3.8CTLVSSTSTTSPTSALGYY221 pKa = 9.08PILSSTPGNPGGEE234 pKa = 4.05PAHH237 pKa = 5.67TKK239 pKa = 9.94RR240 pKa = 11.84RR241 pKa = 11.84RR242 pKa = 11.84KK243 pKa = 8.56PQTRR247 pKa = 11.84RR248 pKa = 11.84LLGPPPSPPPSPPPGRR264 pKa = 11.84PPPPRR269 pKa = 11.84PPTPPPRR276 pKa = 11.84PPATPPSPLATPGSAKK292 pKa = 10.02RR293 pKa = 11.84HH294 pKa = 5.92RR295 pKa = 11.84EE296 pKa = 3.46TSAAAGAEE304 pKa = 4.1GRR306 pKa = 11.84GGSGDD311 pKa = 3.51SFGGVSEE318 pKa = 4.62CDD320 pKa = 3.54CNRR323 pKa = 11.84DD324 pKa = 3.05SGKK327 pKa = 9.99RR328 pKa = 11.84RR329 pKa = 11.84RR330 pKa = 11.84TDD332 pKa = 3.3PLIPCLLIGGGANQVKK348 pKa = 10.01CLRR351 pKa = 11.84HH352 pKa = 5.31RR353 pKa = 11.84LKK355 pKa = 10.94VQFFGLYY362 pKa = 9.91SNCSTTWSWVGHH374 pKa = 5.92SGSTPNHH381 pKa = 6.64RR382 pKa = 11.84ICVSFLNEE390 pKa = 3.55EE391 pKa = 3.86QRR393 pKa = 11.84NIFLNFVPLPGTVTVAPAEE412 pKa = 4.24LPFF415 pKa = 5.72

Molecular weight: 45.94 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

6

0

6

2460

137

642

410.0

45.54

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.626 ± 0.513

2.48 ± 0.695

5.935 ± 0.535

5.813 ± 0.626

3.78 ± 0.334

6.951 ± 0.384

2.846 ± 1.027

3.699 ± 0.452

4.512 ± 0.921

9.431 ± 0.449

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.789 ± 0.41

3.821 ± 0.502

7.073 ± 1.058

3.577 ± 0.675

6.179 ± 0.536

8.618 ± 0.914

5.894 ± 0.573

6.504 ± 0.377

1.504 ± 0.229

2.967 ± 0.224
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski