Trichoplax sp. H2

Taxonomy: cellular organisms; Eukaryota; Opisthokonta; Metazoa; Eumetazoa; Placozoa; Trichoplacidae; Trichoplax; unclassified Trichoplax

Average proteome isoelectric point is 6.99

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 12150 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A369RR91|A0A369RR91_9METZ Uncharacterized protein (Fragment) OS=Trichoplax sp. H2 OX=287889 GN=TrispH2_010911 PE=4 SV=1
MM1 pKa = 7.61EE2 pKa = 5.95SDD4 pKa = 3.52SKK6 pKa = 10.65LTSEE10 pKa = 4.51EE11 pKa = 4.37SEE13 pKa = 3.76ISLPSSIIDD22 pKa = 4.25DD23 pKa = 4.54GCCVAPFYY31 pKa = 9.88TQNDD35 pKa = 4.18SLNDD39 pKa = 4.49DD40 pKa = 3.5ATCWKK45 pKa = 10.74NEE47 pKa = 3.82EE48 pKa = 4.29NDD50 pKa = 4.13NINNDD55 pKa = 3.3HH56 pKa = 6.74SPTYY60 pKa = 8.69ITCPTGLNDD69 pKa = 3.58QDD71 pKa = 4.28SINRR75 pKa = 11.84NLTTHH80 pKa = 6.09HH81 pKa = 6.96TDD83 pKa = 3.34DD84 pKa = 6.0DD85 pKa = 4.68GDD87 pKa = 3.98NLHH90 pKa = 7.49DD91 pKa = 4.35RR92 pKa = 11.84LTNLMQKK99 pKa = 10.59LDD101 pKa = 3.84TTQSSVAVKK110 pKa = 9.44TVDD113 pKa = 3.69KK114 pKa = 11.13LLTTAINRR122 pKa = 11.84YY123 pKa = 9.72SDD125 pKa = 3.21DD126 pKa = 3.36QYY128 pKa = 11.31RR129 pKa = 11.84CRR131 pKa = 11.84AFQIARR137 pKa = 11.84CILQQYY143 pKa = 9.34GMEE146 pKa = 4.58PFQSLQTDD154 pKa = 3.65SLKK157 pKa = 11.09YY158 pKa = 10.09PGLTQDD164 pKa = 3.43VLDD167 pKa = 4.4YY168 pKa = 11.22LNEE171 pKa = 4.25VQLSTMDD178 pKa = 4.61EE179 pKa = 4.29IATSS183 pKa = 3.42

Molecular weight: 20.66 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A369RZF1|A0A369RZF1_9METZ Uncharacterized protein PYUK71.03c OS=Trichoplax sp. H2 OX=287889 GN=TrispH2_007539 PE=4 SV=1
MM1 pKa = 7.28ATPRR5 pKa = 11.84LCRR8 pKa = 11.84TNLNLICCFQKK19 pKa = 10.72CLNNIHH25 pKa = 6.68APSGLQRR32 pKa = 11.84AGIATTPIILGTKK45 pKa = 9.76AKK47 pKa = 10.23RR48 pKa = 11.84PPRR51 pKa = 11.84GVNLDD56 pKa = 3.2KK57 pKa = 10.86RR58 pKa = 11.84IRR60 pKa = 11.84PYY62 pKa = 10.51RR63 pKa = 11.84YY64 pKa = 8.01GVTVASEE71 pKa = 4.21SQNTGCISGSRR82 pKa = 11.84QWTRR86 pKa = 11.84EE87 pKa = 3.89RR88 pKa = 11.84ITDD91 pKa = 3.57DD92 pKa = 3.26LMIRR96 pKa = 11.84SFIRR100 pKa = 11.84GTFLPFLDD108 pKa = 4.47HH109 pKa = 7.14KK110 pKa = 10.59RR111 pKa = 11.84QTVVIKK117 pKa = 10.63RR118 pKa = 11.84KK119 pKa = 10.04LNTIIVALFVVPRR132 pKa = 11.84DD133 pKa = 3.67QISRR137 pKa = 11.84IYY139 pKa = 10.5FLVGYY144 pKa = 9.71AEE146 pKa = 4.4KK147 pKa = 11.05LMGAMFGCNVQLVLQTGHH165 pKa = 5.99YY166 pKa = 9.89

Molecular weight: 18.81 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

12150

0

12150

6586016

20

8009

542.1

61.37

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.921 ± 0.023

2.079 ± 0.027

5.647 ± 0.022

5.78 ± 0.034

3.98 ± 0.016

4.868 ± 0.025

2.341 ± 0.011

7.328 ± 0.023

6.636 ± 0.026

9.321 ± 0.027

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.155 ± 0.01

6.052 ± 0.022

3.887 ± 0.019

4.321 ± 0.017

4.895 ± 0.017

8.619 ± 0.028

5.746 ± 0.021

5.588 ± 0.015

1.067 ± 0.008

3.767 ± 0.015
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski