Listeria booriae

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria

Average proteome isoelectric point is 6.2

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3104 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A099W950|A0A099W950_9LIST Uncharacterized protein OS=Listeria booriae OX=1552123 GN=EP57_06610 PE=4 SV=1
MM1 pKa = 7.29TVLLLIFFGFLLFLCLVALIVGVILFIVRR30 pKa = 11.84KK31 pKa = 9.85GKK33 pKa = 8.79MLGALMMAGSLVLGFPLFGGFMASIIMAAPMEE65 pKa = 4.14YY66 pKa = 10.29HH67 pKa = 6.48NNSTMMHH74 pKa = 7.57DD75 pKa = 4.43DD76 pKa = 3.99LMDD79 pKa = 4.18GSTYY83 pKa = 11.13DD84 pKa = 3.65DD85 pKa = 3.7TGGSDD90 pKa = 4.3DD91 pKa = 3.72SSSYY95 pKa = 11.38YY96 pKa = 10.51DD97 pKa = 5.35DD98 pKa = 3.94SDD100 pKa = 4.54EE101 pKa = 4.63YY102 pKa = 10.98TDD104 pKa = 5.65DD105 pKa = 3.56WDD107 pKa = 3.57EE108 pKa = 4.67DD109 pKa = 3.96EE110 pKa = 5.54YY111 pKa = 12.02YY112 pKa = 10.96SDD114 pKa = 6.23DD115 pKa = 3.44YY116 pKa = 10.82TQYY119 pKa = 11.53KK120 pKa = 9.13VGQAAEE126 pKa = 4.29FQDD129 pKa = 4.34GTWVTVSKK137 pKa = 10.82LEE139 pKa = 3.9KK140 pKa = 8.49WTGDD144 pKa = 3.71SEE146 pKa = 4.67FQTPMAGFYY155 pKa = 10.83VKK157 pKa = 10.1ATILLEE163 pKa = 4.37NKK165 pKa = 10.08GKK167 pKa = 8.78EE168 pKa = 4.35TVDD171 pKa = 4.48FYY173 pKa = 11.84ADD175 pKa = 3.2EE176 pKa = 4.26FQIYY180 pKa = 10.2DD181 pKa = 3.33QDD183 pKa = 3.93NFDD186 pKa = 4.48GEE188 pKa = 4.46NTYY191 pKa = 10.97KK192 pKa = 10.69EE193 pKa = 4.18DD194 pKa = 3.37WNLSLKK200 pKa = 10.45PGAKK204 pKa = 8.82ATRR207 pKa = 11.84TVYY210 pKa = 10.7FDD212 pKa = 3.43VYY214 pKa = 11.13GNGPFHH220 pKa = 6.93VVLSDD225 pKa = 3.49VSWSGSVKK233 pKa = 10.61

Molecular weight: 26.24 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A099WB28|A0A099WB28_9LIST ATP-dependent protease subunit HslV OS=Listeria booriae OX=1552123 GN=hslV PE=3 SV=1
MM1 pKa = 7.35KK2 pKa = 9.43RR3 pKa = 11.84TYY5 pKa = 10.29QPSKK9 pKa = 9.59RR10 pKa = 11.84KK11 pKa = 9.09RR12 pKa = 11.84KK13 pKa = 8.75KK14 pKa = 9.02VHH16 pKa = 5.87GFRR19 pKa = 11.84QRR21 pKa = 11.84MSSKK25 pKa = 9.81NGRR28 pKa = 11.84RR29 pKa = 11.84VLASRR34 pKa = 11.84RR35 pKa = 11.84RR36 pKa = 11.84KK37 pKa = 8.73GRR39 pKa = 11.84KK40 pKa = 8.76VLSAA44 pKa = 4.05

Molecular weight: 5.31 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3104

0

3104

990240

37

2366

319.0

35.57

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.229 ± 0.057

0.626 ± 0.011

5.576 ± 0.051

6.65 ± 0.046

4.548 ± 0.04

6.764 ± 0.034

1.847 ± 0.022

7.469 ± 0.048

6.489 ± 0.04

9.421 ± 0.056

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.748 ± 0.025

4.433 ± 0.035

3.531 ± 0.027

3.834 ± 0.031

3.863 ± 0.03

5.62 ± 0.031

6.43 ± 0.07

7.347 ± 0.044

1.011 ± 0.018

3.565 ± 0.027
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski