Pseudodesulfovibrio mercurii

Taxonomy: cellular organisms; Bacteria; Proteobacteria; delta/epsilon subdivisions; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Pseudodesulfovibrio

Average proteome isoelectric point is 6.28

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3451 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|F0JG37|F0JG37_9DELT Pyruvate carboxylase OS=Pseudodesulfovibrio mercurii OX=641491 GN=DND132_0569 PE=4 SV=1
MM1 pKa = 7.69NIRR4 pKa = 11.84RR5 pKa = 11.84FLWLVVLCFCLVTSEE20 pKa = 5.1AFANPSITLYY30 pKa = 10.91DD31 pKa = 3.17WAFNIDD37 pKa = 3.8GVITTSGDD45 pKa = 3.51MPVSGSLTDD54 pKa = 4.01GLGEE58 pKa = 4.39LSWSTSEE65 pKa = 4.58AGSHH69 pKa = 4.8TFIAFFDD76 pKa = 4.08YY77 pKa = 11.15EE78 pKa = 4.0IDD80 pKa = 3.73EE81 pKa = 4.53PLNTFFNEE89 pKa = 3.5YY90 pKa = 9.1GAAVGVPAPGMMWEE104 pKa = 3.82IDD106 pKa = 3.48EE107 pKa = 4.91PGFLFGDD114 pKa = 4.14IYY116 pKa = 10.4THH118 pKa = 5.93VLAGALDD125 pKa = 3.86NTNALPWGNDD135 pKa = 3.17DD136 pKa = 4.98DD137 pKa = 5.54VSFALGWTFSLAEE150 pKa = 3.96NQIANIILDD159 pKa = 4.04LSEE162 pKa = 5.94LIPLVPFYY170 pKa = 10.34LAQMDD175 pKa = 4.13TQSPEE180 pKa = 3.74TIYY183 pKa = 11.15YY184 pKa = 10.25SGALTIEE191 pKa = 4.36TTPVPEE197 pKa = 4.68PSTIILFGLGLLSALGVARR216 pKa = 11.84ARR218 pKa = 11.84ARR220 pKa = 11.84RR221 pKa = 11.84RR222 pKa = 3.31

Molecular weight: 24.3 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|F0JBL9|F0JBL9_9DELT Extracellular solute-binding protein family 3 OS=Pseudodesulfovibrio mercurii OX=641491 GN=DND132_2318 PE=4 SV=1
MM1 pKa = 7.7PKK3 pKa = 9.95IKK5 pKa = 9.47TRR7 pKa = 11.84RR8 pKa = 11.84AAAKK12 pKa = 9.92RR13 pKa = 11.84FSQTATGKK21 pKa = 10.13FKK23 pKa = 10.78RR24 pKa = 11.84RR25 pKa = 11.84RR26 pKa = 11.84KK27 pKa = 9.07NLRR30 pKa = 11.84HH31 pKa = 6.24ILTKK35 pKa = 10.67KK36 pKa = 7.68NAKK39 pKa = 9.22RR40 pKa = 11.84KK41 pKa = 9.18RR42 pKa = 11.84RR43 pKa = 11.84LGQSTTVDD51 pKa = 3.53TANMKK56 pKa = 10.08AVRR59 pKa = 11.84RR60 pKa = 11.84QLPNGG65 pKa = 3.51

Molecular weight: 7.57 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3451

0

3451

1132766

31

2133

328.2

36.1

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

10.242 ± 0.05

1.305 ± 0.019

5.957 ± 0.038

6.35 ± 0.042

4.088 ± 0.028

8.35 ± 0.038

1.992 ± 0.019

5.096 ± 0.034

4.268 ± 0.042

10.63 ± 0.049

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.844 ± 0.021

2.93 ± 0.02

4.928 ± 0.031

2.838 ± 0.024

6.608 ± 0.043

4.976 ± 0.026

5.178 ± 0.028

7.537 ± 0.031

1.203 ± 0.017

2.679 ± 0.023
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski