Aurantimicrobium minutum

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Actinomycetia; Micrococcales; Microbacteriaceae; Aurantimicrobium

Average proteome isoelectric point is 5.93

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 1574 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A173LXB8|A0A173LXB8_9MICO Uncharacterized protein OS=Aurantimicrobium minutum OX=708131 GN=AUMI_110630 PE=4 SV=1
MM1 pKa = 7.79ADD3 pKa = 3.1STQTYY8 pKa = 9.77LQLLDD13 pKa = 4.42AVQAHH18 pKa = 6.34IQAITGEE25 pKa = 4.15DD26 pKa = 3.48TIARR30 pKa = 11.84DD31 pKa = 3.24WVLVCGVTDD40 pKa = 3.96INAPANDD47 pKa = 3.43IDD49 pKa = 4.11ADD51 pKa = 3.51IRR53 pKa = 11.84IDD55 pKa = 3.57YY56 pKa = 10.6SPRR59 pKa = 11.84TTTYY63 pKa = 10.18TLNGLLNLALDD74 pKa = 4.05VFQPEE79 pKa = 4.45LEE81 pKa = 4.14

Molecular weight: 8.92 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A173LYI0|A0A173LYI0_9MICO Uncharacterized protein OS=Aurantimicrobium minutum OX=708131 GN=AUMI_113560 PE=4 SV=1
MM1 pKa = 7.69SKK3 pKa = 9.0RR4 pKa = 11.84TFQPNNRR11 pKa = 11.84RR12 pKa = 11.84RR13 pKa = 11.84AKK15 pKa = 9.45VHH17 pKa = 5.31GFRR20 pKa = 11.84LRR22 pKa = 11.84MRR24 pKa = 11.84TRR26 pKa = 11.84AGRR29 pKa = 11.84AILAARR35 pKa = 11.84RR36 pKa = 11.84RR37 pKa = 11.84KK38 pKa = 9.65GRR40 pKa = 11.84SEE42 pKa = 3.94LSAA45 pKa = 4.73

Molecular weight: 5.32 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

1574

0

1574

503936

39

3103

320.2

34.61

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

11.305 ± 0.085

0.535 ± 0.014

5.486 ± 0.054

6.259 ± 0.072

3.538 ± 0.037

8.2 ± 0.063

1.974 ± 0.035

5.718 ± 0.045

3.7 ± 0.052

9.826 ± 0.067

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.087 ± 0.031

3.131 ± 0.039

4.826 ± 0.037

3.267 ± 0.035

5.415 ± 0.06

6.408 ± 0.083

6.202 ± 0.089

8.503 ± 0.057

1.36 ± 0.027

2.261 ± 0.032
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski