Acinetobacter phage vB_AbaM_IME512

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; Obolenskvirus

Average proteome isoelectric point is 6.41

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 91 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A3G3BXR7|A0A3G3BXR7_9CAUD Uncharacterized protein OS=Acinetobacter phage vB_AbaM_IME512 OX=2419627 PE=4 SV=1
MM1 pKa = 7.25AQYY4 pKa = 9.85DD5 pKa = 3.73IPLAQVPNQFFTTSLNGVTWEE26 pKa = 3.92ITLEE30 pKa = 3.99TRR32 pKa = 11.84LNNLYY37 pKa = 10.27ISLSNNNDD45 pKa = 2.72GDD47 pKa = 3.93VLLNRR52 pKa = 11.84ICLNRR57 pKa = 11.84TYY59 pKa = 10.23LGHH62 pKa = 6.75GFIFVDD68 pKa = 3.51IDD70 pKa = 3.79GNSDD74 pKa = 3.53PEE76 pKa = 4.25YY77 pKa = 9.62TGLGTRR83 pKa = 11.84YY84 pKa = 10.14LLIWTDD90 pKa = 3.71EE91 pKa = 4.13VV92 pKa = 3.51

Molecular weight: 10.49 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A3G3BXV7|A0A3G3BXV7_9CAUD Uncharacterized protein OS=Acinetobacter phage vB_AbaM_IME512 OX=2419627 PE=4 SV=1
MM1 pKa = 7.31KK2 pKa = 10.39LKK4 pKa = 10.51RR5 pKa = 11.84KK6 pKa = 8.17VRR8 pKa = 11.84RR9 pKa = 11.84GEE11 pKa = 3.88MTKK14 pKa = 10.16TSIDD18 pKa = 3.55QEE20 pKa = 3.77IDD22 pKa = 2.99EE23 pKa = 5.74AIAKK27 pKa = 9.91GGSFYY32 pKa = 10.86KK33 pKa = 10.0IRR35 pKa = 11.84RR36 pKa = 11.84RR37 pKa = 11.84FEE39 pKa = 3.54KK40 pKa = 10.65AILEE44 pKa = 4.06RR45 pKa = 11.84ALIKK49 pKa = 10.08TRR51 pKa = 11.84GNQTEE56 pKa = 4.03AAKK59 pKa = 9.89MLGISRR65 pKa = 11.84SGLGGILKK73 pKa = 10.32RR74 pKa = 11.84VGRR77 pKa = 4.23

Molecular weight: 8.72 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

91

0

91

14130

36

676

155.3

17.54

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.759 ± 0.341

1.217 ± 0.149

6.136 ± 0.238

6.709 ± 0.361

4.459 ± 0.192

6.999 ± 0.265

1.734 ± 0.149

7.247 ± 0.234

7.806 ± 0.377

8.082 ± 0.229

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.845 ± 0.164

6.044 ± 0.239

2.979 ± 0.17

3.758 ± 0.223

3.935 ± 0.174

6.086 ± 0.203

5.357 ± 0.333

6.355 ± 0.241

1.479 ± 0.114

4.013 ± 0.18
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski