Mycoplasma neophronis

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Tenericutes; Mollicutes; Mycoplasmatales; Mycoplasmataceae; Mycoplasma

Average proteome isoelectric point is 6.92

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 623 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A505IGD1|A0A505IGD1_9MOLU Site-specific integrase OS=Mycoplasma neophronis OX=872983 GN=FJR74_01605 PE=4 SV=1
AA1 pKa = 8.04RR2 pKa = 11.84DD3 pKa = 3.35VGGPPLVFQLLWYY16 pKa = 6.36PTTMADD22 pKa = 3.91LSLPSFTEE30 pKa = 3.86NADD33 pKa = 3.52APILDD38 pKa = 4.34RR39 pKa = 11.84DD40 pKa = 4.04VIDD43 pKa = 5.95AFLAWYY49 pKa = 10.27VPGLDD54 pKa = 4.04ISDD57 pKa = 3.54HH58 pKa = 5.72TMLPTTLAPGNADD71 pKa = 3.98LSGLPPAFIGTAEE84 pKa = 4.42HH85 pKa = 7.61DD86 pKa = 3.94PLRR89 pKa = 11.84DD90 pKa = 3.76DD91 pKa = 4.27GACYY95 pKa = 10.72AEE97 pKa = 5.13LLTAAGVSVEE107 pKa = 4.41LSNEE111 pKa = 3.55PTMVHH116 pKa = 6.51GYY118 pKa = 10.77VNFALVVPAAAEE130 pKa = 3.87ATGRR134 pKa = 11.84GLAALKK140 pKa = 10.38RR141 pKa = 11.84ALHH144 pKa = 6.0AA145 pKa = 4.96

Molecular weight: 15.24 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A505IMN9|A0A505IMN9_9MOLU Protein translocase subunit SecY OS=Mycoplasma neophronis OX=872983 GN=secY PE=3 SV=1
MM1 pKa = 7.73ADD3 pKa = 3.69KK4 pKa = 10.46IRR6 pKa = 11.84YY7 pKa = 8.14YY8 pKa = 11.18GLGRR12 pKa = 11.84RR13 pKa = 11.84KK14 pKa = 10.01SSVARR19 pKa = 11.84VYY21 pKa = 10.91LLPGKK26 pKa = 10.75GNFIINGKK34 pKa = 6.91PAKK37 pKa = 9.62EE38 pKa = 4.14HH39 pKa = 6.4LNSDD43 pKa = 3.69ILLKK47 pKa = 10.81DD48 pKa = 3.32ALSPFTVTEE57 pKa = 4.03TTNQFDD63 pKa = 3.3VFANVNGGGLTGQAGAIRR81 pKa = 11.84LGIARR86 pKa = 11.84ALLEE90 pKa = 4.27ASNNEE95 pKa = 3.78YY96 pKa = 10.57RR97 pKa = 11.84NKK99 pKa = 10.73LKK101 pKa = 10.82DD102 pKa = 3.29AGFLTRR108 pKa = 11.84DD109 pKa = 3.24ARR111 pKa = 11.84VKK113 pKa = 9.75EE114 pKa = 4.1RR115 pKa = 11.84KK116 pKa = 9.77KK117 pKa = 10.69FGLRR121 pKa = 11.84KK122 pKa = 9.46ARR124 pKa = 11.84RR125 pKa = 11.84ARR127 pKa = 11.84QFSKK131 pKa = 10.87RR132 pKa = 3.51

Molecular weight: 14.74 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

623

0

623

223019

30

2968

358.0

40.77

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.449 ± 0.136

0.552 ± 0.027

5.503 ± 0.077

7.031 ± 0.108

4.909 ± 0.083

4.834 ± 0.092

1.43 ± 0.036

9.078 ± 0.119

9.395 ± 0.097

9.383 ± 0.08

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.966 ± 0.043

7.969 ± 0.178

2.941 ± 0.061

3.318 ± 0.056

3.084 ± 0.073

6.286 ± 0.075

5.054 ± 0.06

5.677 ± 0.077

0.912 ± 0.032

4.231 ± 0.071
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski