Long Island tick rhabdovirus

Taxonomy: Viruses; Riboviria; Orthornavirae; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Rhabdoviridae; Alpharhabdovirinae; Sawgrhavirus; Island sawgrhavirus

Average proteome isoelectric point is 6.57

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 5 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|W8QQQ8|W8QQQ8_9RHAB GDP polyribonucleotidyltransferase OS=Long Island tick rhabdovirus OX=1459044 PE=4 SV=1
MM1 pKa = 7.5ASKK4 pKa = 10.62RR5 pKa = 11.84LDD7 pKa = 3.52VNLPNCDD14 pKa = 3.43KK15 pKa = 11.09KK16 pKa = 11.24SVNAGLPDD24 pKa = 3.56TKK26 pKa = 10.97VSVVYY31 pKa = 9.81PSEE34 pKa = 3.84WFKK37 pKa = 11.1TNEE40 pKa = 3.78GKK42 pKa = 10.65KK43 pKa = 9.89PIVRR47 pKa = 11.84IYY49 pKa = 10.46RR50 pKa = 11.84ATSTEE55 pKa = 4.56LYY57 pKa = 9.6RR58 pKa = 11.84ALYY61 pKa = 8.63PQIKK65 pKa = 9.41AEE67 pKa = 4.04KK68 pKa = 8.84WDD70 pKa = 4.06DD71 pKa = 3.65ALVTSFLVATLSEE84 pKa = 4.36RR85 pKa = 11.84PDD87 pKa = 3.55LFRR90 pKa = 11.84VEE92 pKa = 5.35SDD94 pKa = 3.78EE95 pKa = 4.03EE96 pKa = 4.31WVSFKK101 pKa = 10.76QQLSVGGQVSVTDD114 pKa = 4.28LLTLEE119 pKa = 4.33EE120 pKa = 5.08LEE122 pKa = 4.88AKK124 pKa = 10.27PPVPGPSKK132 pKa = 8.98PTPAEE137 pKa = 4.2EE138 pKa = 4.15ISFFCALLTIYY149 pKa = 10.44RR150 pKa = 11.84RR151 pKa = 11.84VQARR155 pKa = 11.84EE156 pKa = 3.76NPAVKK161 pKa = 10.47ASDD164 pKa = 3.55LTDD167 pKa = 2.99KK168 pKa = 10.85FKK170 pKa = 11.36NVLGRR175 pKa = 11.84EE176 pKa = 4.33PYY178 pKa = 11.0NMSDD182 pKa = 2.98EE183 pKa = 4.65DD184 pKa = 3.9ARR186 pKa = 11.84LMVPIAGTANLTSGFMRR203 pKa = 11.84ILSVIDD209 pKa = 3.17MFFVKK214 pKa = 10.26FPQAPGSAVRR224 pKa = 11.84IATFTLRR231 pKa = 11.84YY232 pKa = 9.05RR233 pKa = 11.84GCTAITALTHH243 pKa = 6.21ACITLGLDD251 pKa = 3.52AYY253 pKa = 10.47DD254 pKa = 4.07LASLIVPQSPADD266 pKa = 3.63DD267 pKa = 3.4AVRR270 pKa = 11.84VYY272 pKa = 11.34EE273 pKa = 5.41DD274 pKa = 3.88GQEE277 pKa = 3.96HH278 pKa = 7.79DD279 pKa = 4.63DD280 pKa = 3.99PYY282 pKa = 11.67GYY284 pKa = 10.41FPYY287 pKa = 10.02HH288 pKa = 5.94FVMGLSNHH296 pKa = 5.74SPYY299 pKa = 11.17SLAAAPSLTFYY310 pKa = 9.64TRR312 pKa = 11.84CLAAFGGSKK321 pKa = 9.69NAAYY325 pKa = 8.53TYY327 pKa = 8.81TAAGIRR333 pKa = 11.84NVPEE337 pKa = 4.86LIEE340 pKa = 3.85TAYY343 pKa = 11.39LLIKK347 pKa = 9.96KK348 pKa = 9.41IRR350 pKa = 11.84RR351 pKa = 11.84LEE353 pKa = 4.28PGDD356 pKa = 3.86LRR358 pKa = 11.84FAEE361 pKa = 4.59SSAMDD366 pKa = 2.9KK367 pKa = 10.51WKK369 pKa = 10.43AHH371 pKa = 5.95KK372 pKa = 9.54EE373 pKa = 4.01ARR375 pKa = 11.84DD376 pKa = 3.76KK377 pKa = 11.24LLKK380 pKa = 10.64DD381 pKa = 3.71DD382 pKa = 6.22DD383 pKa = 4.28EE384 pKa = 7.18DD385 pKa = 3.82EE386 pKa = 4.53VQLHH390 pKa = 6.47EE391 pKa = 4.61GAQEE395 pKa = 4.05RR396 pKa = 11.84GLVASLLALPTRR408 pKa = 11.84QEE410 pKa = 3.88LTPLHH415 pKa = 6.3RR416 pKa = 11.84RR417 pKa = 11.84IDD419 pKa = 3.53EE420 pKa = 4.38ALAEE424 pKa = 4.28LSVHH428 pKa = 6.53HH429 pKa = 6.26GLSRR433 pKa = 11.84KK434 pKa = 9.04NAMGLYY440 pKa = 9.94HH441 pKa = 7.72AAQCFKK447 pKa = 10.58GADD450 pKa = 3.53VGTVGHH456 pKa = 7.06TIYY459 pKa = 10.57DD460 pKa = 3.34QYY462 pKa = 11.68GRR464 pKa = 11.84VPPYY468 pKa = 10.84VEE470 pKa = 3.8

Molecular weight: 52.29 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|W8R902|W8R902_9RHAB Glycoprotein OS=Long Island tick rhabdovirus OX=1459044 PE=3 SV=1
MM1 pKa = 7.26LRR3 pKa = 11.84YY4 pKa = 10.05AFVLLMIAVAFGWEE18 pKa = 4.22PEE20 pKa = 4.12LGEE23 pKa = 4.18YY24 pKa = 8.21WVPSPISPWRR34 pKa = 11.84LATKK38 pKa = 10.07TDD40 pKa = 4.13FTCPSIRR47 pKa = 11.84VDD49 pKa = 3.29PVSPLKK55 pKa = 10.67AINEE59 pKa = 4.51SYY61 pKa = 11.06VEE63 pKa = 4.11YY64 pKa = 8.64PTMGGARR71 pKa = 11.84KK72 pKa = 7.97EE73 pKa = 4.2HH74 pKa = 6.71PGWLCIRR81 pKa = 11.84KK82 pKa = 7.75TYY84 pKa = 8.73QTTCDD89 pKa = 3.34TNFWGHH95 pKa = 4.54QTIKK99 pKa = 10.46HH100 pKa = 5.42EE101 pKa = 4.19EE102 pKa = 3.75WSIVADD108 pKa = 3.98VEE110 pKa = 4.24EE111 pKa = 4.53CRR113 pKa = 11.84QAVSHH118 pKa = 5.75YY119 pKa = 10.7QLGTYY124 pKa = 8.77EE125 pKa = 4.83DD126 pKa = 4.42PRR128 pKa = 11.84HH129 pKa = 6.49PDD131 pKa = 3.59PVCTWMAISSTYY143 pKa = 10.25RR144 pKa = 11.84AGTLLLPHH152 pKa = 6.32TTLVDD157 pKa = 3.53PFSYY161 pKa = 10.43TFVDD165 pKa = 3.57SLFPGTHH172 pKa = 6.88CKK174 pKa = 9.73TIPCMTVHH182 pKa = 7.51PDD184 pKa = 3.81VLWHH188 pKa = 6.28SSSTITEE195 pKa = 4.22NCPMANGIHH204 pKa = 6.1IKK206 pKa = 10.43LYY208 pKa = 9.5NDD210 pKa = 2.47NRR212 pKa = 11.84ARR214 pKa = 11.84KK215 pKa = 8.67KK216 pKa = 8.68AHH218 pKa = 6.05EE219 pKa = 4.21WLSVNDD225 pKa = 4.57GPLIPLGGSCSMHH238 pKa = 6.05YY239 pKa = 10.17CGQAGLRR246 pKa = 11.84TPGGIWYY253 pKa = 8.4PYY255 pKa = 10.23LGRR258 pKa = 11.84QKK260 pKa = 10.9YY261 pKa = 8.78PEE263 pKa = 4.61CKK265 pKa = 9.18EE266 pKa = 3.65AWRR269 pKa = 11.84ATPTPAGNGAKK280 pKa = 10.03LDD282 pKa = 3.71IEE284 pKa = 4.24LQEE287 pKa = 4.3LIARR291 pKa = 11.84RR292 pKa = 11.84EE293 pKa = 4.16CLNVLQQIRR302 pKa = 11.84SGVSPTFHH310 pKa = 6.62MLSHH314 pKa = 6.37FQPRR318 pKa = 11.84HH319 pKa = 4.21TGYY322 pKa = 10.6YY323 pKa = 8.77RR324 pKa = 11.84VYY326 pKa = 10.75RR327 pKa = 11.84MNNGLVEE334 pKa = 4.15YY335 pKa = 10.39SLALYY340 pKa = 10.54APIFNITMPPSINFGVRR357 pKa = 11.84RR358 pKa = 11.84NKK360 pKa = 10.07SRR362 pKa = 11.84YY363 pKa = 7.6HH364 pKa = 7.58LPMIEE369 pKa = 4.16SGHH372 pKa = 6.13PGVWSAFNGIHH383 pKa = 6.21IMHH386 pKa = 7.24NKK388 pKa = 7.72TVIVPEE394 pKa = 3.99LEE396 pKa = 4.15LYY398 pKa = 10.01KK399 pKa = 10.46EE400 pKa = 4.75HH401 pKa = 7.38YY402 pKa = 10.33SEE404 pKa = 4.02TLFYY408 pKa = 11.24YY409 pKa = 10.41KK410 pKa = 10.49AQLAEE415 pKa = 4.47HH416 pKa = 7.26PSQVRR421 pKa = 11.84QANSTDD427 pKa = 3.12ITPHH431 pKa = 5.71TKK433 pKa = 8.11TTVTVKK439 pKa = 10.63RR440 pKa = 11.84PTLKK444 pKa = 10.58AWFSTMWDD452 pKa = 3.82SLWGKK457 pKa = 9.15VVSITGIILAIFTTGFLIKK476 pKa = 10.16VLPWSRR482 pKa = 11.84LFRR485 pKa = 11.84RR486 pKa = 11.84PQPMHH491 pKa = 6.12PQIVHH496 pKa = 4.89YY497 pKa = 9.21TPATGSVSWW506 pKa = 3.73

Molecular weight: 57.8 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

5

0

5

3588

205

2131

717.6

81.18

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.048 ± 0.897

1.895 ± 0.218

5.295 ± 0.567

6.048 ± 0.316

3.484 ± 0.35

6.159 ± 0.225

2.982 ± 0.451

4.849 ± 0.405

5.072 ± 0.294

10.117 ± 0.858

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.341 ± 0.201

3.372 ± 0.384

6.187 ± 1.057

3.122 ± 0.135

6.494 ± 0.346

7.079 ± 0.241

6.745 ± 0.457

7.023 ± 0.547

2.09 ± 0.35

3.595 ± 0.404
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski